Variant report

Variant	rs1208254
Chromosome Location	chr6:134132516-134132517
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs1208234	0.89[EUR][1000 genomes]
rs1208235	0.98[EUR][1000 genomes]
rs1208236	0.89[EUR][1000 genomes]
rs1208237	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs1208239	0.89[EUR][1000 genomes]
rs1208243	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1208244	0.89[EUR][1000 genomes]
rs1208246	0.96[EUR][1000 genomes]
rs1208247	0.89[EUR][1000 genomes]
rs1208249	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1208251	0.98[EUR][1000 genomes]
rs1208252	0.89[EUR][1000 genomes]
rs1208253	0.89[EUR][1000 genomes]
rs716050	0.89[EUR][1000 genomes]
rs942130	0.89[EUR][1000 genomes]
rs942131	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs942132	0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830812	chr6:133993897-134165407	Enhancers Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	esv34122	chr6:134089019-134378252	Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Enhancers Flanking Active TSS Bivalent/Poised TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:134126200-134136600	Weak transcription	Aorta	Aorta
2	chr6:134128000-134135400	Weak transcription	Ovary	ovary
3	chr6:134128200-134134000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr6:134130000-134134600	Weak transcription	Fetal Lung	lung
5	chr6:134130200-134135400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr6:134131000-134133400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr6:134131200-134135400	Weak transcription	Fetal Stomach	stomach
8	chr6:134131200-134135600	Weak transcription	NHDF-Ad	bronchial

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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