Variant report

Variant	rs12083182
Chromosome Location	chr1:219983092-219983093
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs11118426	0.84[EUR][1000 genomes]
rs11118427	0.83[EUR][1000 genomes]
rs11118428	0.81[EUR][1000 genomes]
rs11118429	0.81[EUR][1000 genomes]
rs11118430	0.82[EUR][1000 genomes]
rs11118431	0.81[EUR][1000 genomes]
rs12082170	0.83[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs12089488	0.88[EUR][1000 genomes]
rs12095559	0.81[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs17006687	0.83[EUR][1000 genomes]
rs55664953	0.81[EUR][1000 genomes]
rs55740390	0.81[EUR][1000 genomes]
rs56088885	0.81[EUR][1000 genomes]
rs6672682	0.83[EUR][1000 genomes]
rs6686864	0.81[EUR][1000 genomes]
rs6687322	0.84[EUR][1000 genomes]
rs72738754	0.81[EUR][1000 genomes]
rs72738777	0.84[EUR][1000 genomes]
rs72738783	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1006393	chr1:219925261-220126458	Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:219972200-219985600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr1:219980200-219985600	Weak transcription	NH-A	brain
3	chr1:219980400-219985200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr1:219980600-219983800	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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