Variant report

Variant	rs12083610
Chromosome Location	chr1:168645367-168645368
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs12083483	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12085048	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12086934	1.00[EUR][1000 genomes]
rs74121329	1.00[EUR][1000 genomes]
rs7545578	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1007846	chr1:168449940-168687265	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv869415	chr1:168467284-169153863	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	44 gene(s)	inside rSNPs	diseases
3	nsv831836	chr1:168538779-168716956	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv872530	chr1:168618641-168658544	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv1001684	chr1:168636622-168663398	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:168642000-168647200	Weak transcription	Brain Angular Gyrus	brain
2	chr1:168643600-168645800	Weak transcription	Brain Hippocampus Middle	brain
3	chr1:168643600-168646800	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr1:168643800-168645400	Weak transcription	Brain Cingulate Gyrus	brain
5	chr1:168644000-168645800	Weak transcription	Brain Substantia Nigra	brain
6	chr1:168644800-168646000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr1:168644800-168647400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr1:168645000-168645400	Weak transcription	HMEC	breast
9	chr1:168645000-168645600	Enhancers	NHEK	skin
10	chr1:168645200-168645800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr1:168645200-168646200	Enhancers	Primary neutrophils fromperipheralblood	blood
12	chr1:168645200-168646200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
13	chr1:168645200-168646200	Enhancers	Brain Anterior Caudate	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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