Variant report

Variant	rs12084607
Chromosome Location	chr1:104722038-104722039
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs12071346	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12074298	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12084796	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17020178	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56870496	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60598258	1.00[AMR][1000 genomes]
rs67655373	1.00[AMR][1000 genomes]
rs72989529	1.00[AMR][1000 genomes]
rs72989539	1.00[AMR][1000 genomes]
rs72989563	1.00[AMR][1000 genomes]
rs72989564	1.00[AMR][1000 genomes]
rs72989571	1.00[AMR][1000 genomes]
rs72989600	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014507	chr1:104307231-104784753	Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1012931	chr1:104322484-104778961	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv872072	chr1:104470622-105076810	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv1010903	chr1:104483363-105468941	Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv482341	chr1:104589525-104731812	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:104715400-104723800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr1:104721200-104723800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
3	chr1:104721800-104722200	Enhancers	Fetal Heart	heart

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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