Variant report

Variant	rs12084888
Chromosome Location	chr1:158658957-158658958
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:16)
CpG islands
(count:0)
Chromatin interactive
region (count:1)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:16 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CEBPD	chr1:158658939-158659356	K562	blood:	n/a	n/a
2	TBL1XR1	chr1:158658832-158659360	K562	blood:	n/a	n/a
3	RCOR1	chr1:158658923-158659178	K562	blood:	n/a	n/a
4	GATA1	chr1:158658522-158659865	PBDE	blood:	n/a	n/a
5	RCOR1	chr1:158658881-158659590	K562	blood:	n/a	n/a
6	TAL1	chr1:158658634-158659536	K562	blood:	n/a	n/a
7	TEAD4	chr1:158658919-158659309	K562	blood:	n/a	n/a
8	GATA2	chr1:158658917-158659277	K562	blood:	n/a	n/a
9	CEBPD	chr1:158658949-158659382	K562	blood:	n/a	n/a
10	GATA2	chr1:158658930-158659302	K562	blood:	n/a	n/a
11	POLR2A	chr1:158658956-158659310	K562	blood:	n/a	n/a
12	POLR2A	chr1:158658937-158659153	K562	blood:	n/a	n/a
13	EP300	chr1:158658815-158659420	K562	blood:	n/a	n/a
14	IRF1	chr1:158658809-158659812	K562	blood:	n/a	n/a
15	TEAD4	chr1:158658831-158659244	K562	blood:	n/a	n/a
16	ARID3A	chr1:158658785-158659538	K562	blood:	n/a	n/a

No data

(count:1 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:158656464..158659384-chr1:159045094..159048407,3	K562	blood:

No data

No data

No data

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs11265061	0.80[AMR][1000 genomes]
rs11265062	0.80[AMR][1000 genomes]
rs12062927	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73022006	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73028094	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7531961	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3491788	chr1:158537183-158725907	Enhancers Strong transcription Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	esv3491789	chr1:158537242-158725858	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	nsv872481	chr1:158625789-158712510	Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	diseases
4	nsv872482	chr1:158635852-158698532	Strong transcription Flanking Active TSS Bivalent Enhancer Weak transcription Active TSS Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
5	nsv872483	chr1:158635852-158712510	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:158658800-158659000	Active TSS	K562	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
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