Variant report

Variant	rs12085358
Chromosome Location	chr1:215824071-215824072
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs11120645	1.00[CHB][hapmap]
rs12071678	1.00[CEU][hapmap]
rs12085362	1.00[CHB][hapmap]
rs730254	1.00[CHB][hapmap];1.00[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430324	chr1:215649163-216082605	Strong transcription Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:215821600-215824200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr1:215823200-215824800	Enhancers	HUES48 Cell Line	embryonic stem cell
3	chr1:215823200-215824800	Enhancers	iPS-20b Cell Line	embryonic stem cell
4	chr1:215823200-215825000	Enhancers	H1 Cell Line	embryonic stem cell
5	chr1:215823200-215825000	Enhancers	HUES6 Cell Line	embryonic stem cell
6	chr1:215823200-215825000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr1:215823200-215825200	Flanking Active TSS	Liver	Liver
8	chr1:215823200-215825400	Enhancers	iPS-18 Cell Line	embryonic stem cell
9	chr1:215823200-215826600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
10	chr1:215823600-215825400	Enhancers	HUES64 Cell Line	embryonic stem cell
11	chr1:215823800-215824200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr1:215824000-215824200	Enhancers	H9 Cell Line	embryonic stem cell
13	chr1:215824000-215824600	Enhancers	ES-I3 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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