Variant report

Variant	rs1208559
Chromosome Location	chr10:38221370-38221371
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10764147	0.83[ASN][1000 genomes]
rs10827835	0.89[ASN][1000 genomes]
rs10827836	0.85[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11011407	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1208592	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13503	0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1735577	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs200935	0.84[ASN][1000 genomes]
rs200936	0.89[ASN][1000 genomes]
rs200937	0.89[ASN][1000 genomes]
rs200939	0.88[ASN][1000 genomes]
rs200943	0.80[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2144849	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2180408	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2257186	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2472150	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2504130	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2504155	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3851078	0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4934916	0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs527163	0.80[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs619739	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs623149	0.82[ASN][1000 genomes]
rs623454	0.82[ASN][1000 genomes]
rs626519	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs629577	0.81[ASN][1000 genomes]
rs639479	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs640774	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs645064	0.81[ASN][1000 genomes]
rs7069702	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7099777	0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs719569	0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895030	chr10:37715737-38674609	Weak transcription Active TSS Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
2	nsv1045684	chr10:37765361-38426204	Weak transcription ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
3	nsv540564	chr10:37765361-38426204	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
4	nsv1040704	chr10:37940024-38451917	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Strong transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
5	nsv1051121	chr10:38155991-38426204	Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
6	nsv540565	chr10:38155991-38426204	Strong transcription Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
7	nsv1052703	chr10:38174640-38266472	ZNF genes & repeats Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs1208559	ZNF37A///ZNF37B	Cis_1M	lymphoblastoid	RTeQTL
rs1208559	HSD17B7///HSD17B7P2///LOC730412	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:38201400-38234200	Weak transcription	Left Ventricle	heart
2	chr10:38201400-38240000	Weak transcription	Brain Inferior Temporal Lobe	brain
3	chr10:38203200-38233600	Weak transcription	Skeletal Muscle Female	skeletal muscle
4	chr10:38206600-38231800	Weak transcription	Skeletal Muscle Male	skeletal muscle
5	chr10:38220800-38241000	Weak transcription	Brain Cingulate Gyrus	brain

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