Variant report

Variant	rs12086788
Chromosome Location	chr1:171147844-171147845
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs10912525	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12064117	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12066662	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12067810	0.82[EUR][1000 genomes]
rs12071595	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12072321	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12072579	0.94[AFR][1000 genomes]
rs12076944	0.94[AFR][1000 genomes]
rs12078869	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12079736	0.94[AFR][1000 genomes]
rs12082112	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12082366	0.94[AFR][1000 genomes]
rs12087971	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12091865	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs16864136	0.94[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16864165	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs16864191	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2020860	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2020865	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2205726	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2421708	0.95[AFR][1000 genomes]
rs28369791	0.95[AFR][1000 genomes]
rs28369796	0.95[AFR][1000 genomes]
rs28369826	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs28369834	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs28369837	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs28369850	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs28369868	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs28369872	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs28369883	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs28369886	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs28969551	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs29001609	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs56060753	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs56159716	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs56233063	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs57182460	0.82[EUR][1000 genomes]
rs58324390	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs58956470	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs59910498	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs61225278	0.85[EUR][1000 genomes]
rs6668231	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6673781	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6689616	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs73032526	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs74122287	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1001228	chr1:170885787-171452579	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	23 gene(s)	inside rSNPs	diseases
2	esv14617	chr1:171016086-171726961	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
3	nsv1005902	chr1:171036690-171254916	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	14 gene(s)	inside rSNPs	diseases
4	nsv535203	chr1:171036690-171254916	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	14 gene(s)	inside rSNPs	diseases
5	esv10193	chr1:171128845-171414611	Weak transcription Active TSS Enhancers Bivalent Enhancer Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:171143800-171153200	Weak transcription	Fetal Lung	lung

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