Variant report

Variant	rs12087193
Chromosome Location	chr1:112517309-112517310
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:112494260..112496392-chr1:112516414..112519150,2	MCF-7	breast:
2	chr1:112508154..112509860-chr1:112515408..112518035,2	MCF-7	breast:
3	chr1:112514659..112518449-chr1:112519025..112521837,4	MCF-7	breast:
4	chr1:112516881..112519538-chr17:57073071..57075205,2	MCF-7	breast:
5	chr1:112509864..112511632-chr1:112517281..112518900,2	K562	blood:

Extended variants
information (count: 2 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs12083502	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831048	chr1:112459697-112680279	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:112507000-112523800	Weak transcription	Fetal Brain Female	brain
2	chr1:112507400-112518400	Weak transcription	Brain Anterior Caudate	brain
3	chr1:112507400-112519200	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr1:112507400-112524200	Weak transcription	Brain Substantia Nigra	brain
5	chr1:112507800-112524000	Weak transcription	Cortex derived primary cultured neurospheres	brain
6	chr1:112508600-112529400	Weak transcription	Brain Hippocampus Middle	brain
7	chr1:112510200-112517800	Weak transcription	Pancreas	Pancrea
8	chr1:112510200-112529000	Weak transcription	Esophagus	oesophagus
9	chr1:112510800-112524000	Weak transcription	Brain Cingulate Gyrus	brain
10	chr1:112510800-112524000	Weak transcription	Spleen	Spleen
11	chr1:112511200-112529800	Weak transcription	Colon Smooth Muscle	Colon
12	chr1:112511400-112523200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
13	chr1:112511400-112531000	Weak transcription	Duodenum Smooth Muscle	Duodenum
14	chr1:112512000-112517600	Weak transcription	Fetal Stomach	stomach
15	chr1:112512000-112518600	Weak transcription	Liver	Liver
16	chr1:112512000-112519200	Weak transcription	Brain Angular Gyrus	brain
17	chr1:112514400-112519200	Weak transcription	Left Ventricle	heart
18	chr1:112514600-112519200	Weak transcription	Skeletal Muscle Female	skeletal muscle
19	chr1:112515400-112517400	Enhancers	Brain Germinal Matrix	brain
20	chr1:112515400-112517800	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
21	chr1:112516600-112518400	Enhancers	Skeletal Muscle Male	skeletal muscle
22	chr1:112516600-112521000	Strong transcription	Aorta	Aorta
23	chr1:112516600-112530200	Weak transcription	Adipose Nuclei	Adipose
24	chr1:112516800-112519200	Weak transcription	Right Ventricle	heart
25	chr1:112517000-112525000	Strong transcription	Stomach Smooth Muscle	stomach

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