Variant report

Variant	rs12087762
Chromosome Location	chr1:212651399-212651400
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:13)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:13 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr1:212648977..212651974-chr1:212781395..212783104,2	MCF-7	breast:
2	chr1:212650198..212651416-chr1:212803125..212803807,3	MCF-7	breast:
3	chr1:212650902..212653623-chr1:212731690..212733930,2	K562	blood:
4	chr1:212650032..212653623-chr1:212730266..212733190,4	K562	blood:
5	chr1:212645805..212648932-chr1:212650111..212654210,5	K562	blood:
6	chr1:212651212..212653872-chr1:212658074..212660402,3	K562	blood:
7	chr1:212643908..212648932-chr1:212649184..212654651,9	K562	blood:
8	chr1:212648507..212667078-chr1:212779147..212787651,52	K562	blood:
9	chr1:212651265..212654246-chr1:212726991..212729981,2	K562	blood:
10	chr1:212645024..212669819-chr1:212778382..212791615,68	K562	blood:
11	chr1:212651102..212654693-chr1:212655377..212658457,3	K562	blood:
12	chr1:212651362..212653515-chr1:212793068..212795990,2	K562	blood:
13	chr1:212641496..212643517-chr1:212649175..212651881,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000162772	Chromatin interaction
ENSG00000264590	Chromatin interaction
ENSG00000260805	Chromatin interaction

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs11119947	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11119952	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11119954	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12067814	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12080266	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs13374814	0.84[AMR][1000 genomes]
rs34052970	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs59798077	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6660931	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6694503	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6697091	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:14 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1009376	chr1:212292357-212680320	Weak transcription Strong transcription Enhancers Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
2	nsv549139	chr1:212332294-212876902	Flanking Active TSS Weak transcription Bivalent Enhancer Strong transcription Enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	114 gene(s)	inside rSNPs	diseases
3	nsv997629	chr1:212404489-212658785	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
4	nsv535286	chr1:212404489-212658785	Strong transcription Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
5	nsv1013110	chr1:212555764-212948092	Flanking Active TSS Bivalent/Poised TSS Strong transcription Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	81 gene(s)	inside rSNPs	diseases
6	nsv535287	chr1:212555764-212948092	Weak transcription Bivalent Enhancer Flanking Active TSS Enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	81 gene(s)	inside rSNPs	diseases
7	nsv873159	chr1:212610755-212669475	Enhancers Weak transcription Bivalent Enhancer Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
8	nsv873160	chr1:212610755-212675482	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
9	nsv873161	chr1:212610755-212683565	Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
10	nsv873162	chr1:212610755-212716033	Weak transcription Bivalent Enhancer Bivalent/Poised TSS Enhancers Strong transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
11	nsv527863	chr1:212617423-212700618	Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
12	nsv873163	chr1:212629935-212669475	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
13	esv2757770	chr1:212648143-212843103	Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	77 gene(s)	inside rSNPs	diseases
14	esv2758996	chr1:212648143-212843103	Enhancers Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent Enhancer Flanking Active TSS Weak transcription Strong transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	77 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:212641600-212658200	Weak transcription	Gastric	stomach
2	chr1:212641800-212655200	Weak transcription	Right Atrium	heart
3	chr1:212643800-212652400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr1:212645000-212652400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr1:212650200-212651600	Enhancers	Brain Substantia Nigra	brain
6	chr1:212650200-212651600	Enhancers	GM12878-XiMat	blood
7	chr1:212650400-212651400	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
8	chr1:212650400-212651400	Enhancers	Primary T helper naive cells from peripheral blood	blood
9	chr1:212650400-212651400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
10	chr1:212650400-212651400	Enhancers	Brain Inferior Temporal Lobe	brain
11	chr1:212650400-212651400	Enhancers	Placenta Amnion	Placenta Amnion
12	chr1:212650400-212651600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr1:212650400-212651600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr1:212650400-212651600	Enhancers	Duodenum Mucosa	Duodenum
15	chr1:212650400-212651600	Enhancers	A549	lung
16	chr1:212650400-212651600	Enhancers	Hela-S3	cervix
17	chr1:212650400-212651800	Enhancers	Fetal Intestine Large	intestine
18	chr1:212650400-212651800	Enhancers	Stomach Mucosa	stomach
19	chr1:212650400-212652000	Enhancers	Fetal Intestine Small	intestine
20	chr1:212650400-212652200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
21	chr1:212650400-212652400	Enhancers	K562	blood
22	chr1:212650400-212652600	Enhancers	Rectal Mucosa Donor 31	rectum
23	chr1:212650400-212653400	Enhancers	Placenta	Placenta
24	chr1:212650600-212651400	Enhancers	Primary T helper cells PMA-I stimulated	--
25	chr1:212650600-212651800	Enhancers	NHEK	skin
26	chr1:212650600-212667800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
27	chr1:212650800-212651600	Enhancers	Primary T helper cells fromperipheralblood	blood
28	chr1:212650800-212652800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr1:212650800-212661600	Weak transcription	Brain Cingulate Gyrus	brain
30	chr1:212651000-212651600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
31	chr1:212651000-212651600	Bivalent Enhancer	Primary Natural Killer cells fromperipheralblood	blood
32	chr1:212651000-212653000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
33	chr1:212651000-212655400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
34	chr1:212651000-212658200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
35	chr1:212651200-212655800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
36	chr1:212651200-212656200	Weak transcription	Rectal Mucosa Donor 29	rectum

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