Variant report

Variant	rs12087826
Chromosome Location	chr1:211804166-211804167
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr1:211779113..211779919-chr1:211803601..211804198,2	K562	blood:
2	chr1:211802788..211806999-chr1:211814684..211819078,4	K562	blood:
3	chr1:211782443..211790536-chr1:211800686..211806134,8	K562	blood:
4	chr1:211750683..211751727-chr1:211803429..211804168,3	K562	blood:
5	chr1:211793145..211800078-chr1:211800841..211805263,11	K562	blood:
6	chr1:211741510..211743942-chr1:211802313..211805190,2	K562	blood:
7	chr1:211751888..211754442-chr1:211802354..211807016,4	K562	blood:
8	chr1:211750004..211752900-chr1:211803932..211806097,2	MCF-7	breast:
9	chr1:211723836..211726328-chr1:211802302..211805262,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000170385	Chromatin interaction
ENSG00000228792	Chromatin interaction

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10779564	0.87[CEU][hapmap];0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10779565	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10779566	0.88[CEU][hapmap];0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10863919	0.88[CEU][hapmap];0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10863920	0.83[EUR][1000 genomes]
rs11119778	1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.84[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs11119780	0.88[CEU][hapmap];0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11119787	0.84[AMR][1000 genomes]
rs11576130	0.96[ASN][1000 genomes]
rs12123429	0.88[CEU][hapmap];0.85[CHB][hapmap];0.85[AMR][1000 genomes]
rs12727505	0.90[AMR][1000 genomes]
rs12741252	0.95[CEU][hapmap];0.85[CHB][hapmap];0.81[YRI][hapmap];0.91[AMR][1000 genomes]
rs1530400	0.90[JPT][hapmap];0.85[ASN][1000 genomes]
rs4245741	0.88[CEU][hapmap];0.83[EUR][1000 genomes]
rs4951416	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4951418	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4951419	0.87[EUR][1000 genomes]
rs4951421	0.84[EUR][1000 genomes]
rs4951539	0.96[CEU][hapmap];0.85[EUR][1000 genomes]
rs4951541	0.82[CHB][hapmap]
rs61851777	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6540697	0.92[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs6540698	0.86[CEU][hapmap];0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6660850	0.92[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs6670986	0.88[CEU][hapmap];0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6671497	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6671506	0.83[EUR][1000 genomes]
rs6675796	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs6682640	0.89[ASN][1000 genomes]
rs7513348	0.83[EUR][1000 genomes]
rs7523748	0.88[CEU][hapmap];0.80[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7551341	0.82[CHB][hapmap];0.90[JPT][hapmap];0.86[ASN][1000 genomes]
rs7553718	0.82[CHB][hapmap];0.90[JPT][hapmap];0.86[ASN][1000 genomes]
rs7554315	0.90[JPT][hapmap];0.85[ASN][1000 genomes]
rs894853	0.88[CEU][hapmap];0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs894854	0.85[EUR][1000 genomes]
rs894855	0.85[EUR][1000 genomes]

No data

Chromatin state (count:47 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:211800000-211807200	Enhancers	Fetal Heart	heart
2	chr1:211802000-211806400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr1:211802800-211804200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
4	chr1:211803000-211804800	Enhancers	Fetal Intestine Small	intestine
5	chr1:211803400-211804200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr1:211803400-211804200	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr1:211803400-211804200	Flanking Bivalent TSS/Enh	HepG2	liver
8	chr1:211803400-211804800	Enhancers	Fetal Intestine Large	intestine
9	chr1:211803400-211804800	Enhancers	Placenta	Placenta
10	chr1:211803400-211804800	Flanking Active TSS	K562	blood
11	chr1:211803400-211805000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
12	chr1:211803400-211805000	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr1:211803400-211806000	Enhancers	Breast Myoepithelial Primary Cells	Breast
14	chr1:211803400-211807000	Enhancers	Ovary	ovary
15	chr1:211803400-211807600	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin01	Skin
16	chr1:211803400-211807600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
17	chr1:211803600-211804200	Enhancers	H1 Cell Line	embryonic stem cell
18	chr1:211803600-211804200	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Female	--
19	chr1:211803600-211804200	Flanking Bivalent TSS/Enh	Foreskin Keratinocyte Primary Cells skin02	Skin
20	chr1:211803600-211804200	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
21	chr1:211803600-211804200	Enhancers	Esophagus	oesophagus
22	chr1:211803600-211804400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
23	chr1:211803600-211804400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
24	chr1:211803600-211804800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
25	chr1:211803600-211805000	Enhancers	Fetal Lung	lung
26	chr1:211803600-211807200	Enhancers	Fetal Muscle Trunk	muscle
27	chr1:211803600-211807200	Enhancers	Fetal Muscle Leg	muscle
28	chr1:211803800-211804200	Enhancers	iPS-20b Cell Line	embryonic stem cell
29	chr1:211803800-211804200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
30	chr1:211803800-211804200	Flanking Active TSS	Left Ventricle	heart
31	chr1:211803800-211804200	Flanking Active TSS	Right Atrium	heart
32	chr1:211803800-211804200	Enhancers	A549	lung
33	chr1:211803800-211807600	Enhancers	Fetal Thymus	thymus
34	chr1:211804000-211804200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
35	chr1:211804000-211804200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
36	chr1:211804000-211804200	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin02	Skin
37	chr1:211804000-211804200	Enhancers	Lung	lung
38	chr1:211804000-211804200	Flanking Active TSS	Right Ventricle	heart
39	chr1:211804000-211804400	Flanking Active TSS	Spleen	Spleen
40	chr1:211804000-211804400	Flanking Active TSS	Hela-S3	cervix
41	chr1:211804000-211804400	Flanking Bivalent TSS/Enh	NHEK	skin
42	chr1:211804000-211805000	Enhancers	ES-I3 Cell Line	embryonic stem cell
43	chr1:211804000-211805000	Enhancers	HUES6 Cell Line	embryonic stem cell
44	chr1:211804000-211805600	Weak transcription	HMEC	breast
45	chr1:211804000-211806400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
46	chr1:211804000-211806400	Weak transcription	Gastric	stomach
47	chr1:211804000-211806800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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