The 2.0 version of rSNPBase

Variant report

Variant rs12088488
Chromosome Location chr1:57021728-57021729
allele G/T
Outlinks Ensembl   UCSC
Chromatin state (count:76 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:57001800-57021800 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
2 chr1:57007400-57028400 Weak transcription Sigmoid Colon Sigmoid Colon
3 chr1:57009600-57028000 Weak transcription Fetal Kidney kidney
4 chr1:57014000-57026000 Weak transcription Fetal Intestine Large intestine
5 chr1:57016000-57038600 Weak transcription HSMMtube muscle
6 chr1:57016600-57022200 Genic enhancers NHDF-Ad bronchial
7 chr1:57016800-57023400 Weak transcription Fetal Intestine Small intestine
8 chr1:57017400-57025000 Strong transcription IMR90 fetal lung fibroblasts Cell Line lung
9 chr1:57017400-57035400 Weak transcription Esophagus oesophagus
10 chr1:57017400-57035400 Weak transcription Fetal Thymus thymus
11 chr1:57017400-57039400 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
12 chr1:57017600-57025600 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
13 chr1:57017800-57023400 Weak transcription Duodenum Smooth Muscle Duodenum
14 chr1:57017800-57028200 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
15 chr1:57017800-57028600 Weak transcription Pancreas Pancrea
16 chr1:57017800-57040800 Enhancers Cortex derived primary cultured neurospheres brain
17 chr1:57018400-57022000 Enhancers Brain Substantia Nigra brain
18 chr1:57018600-57022000 Weak transcription Muscle Satellite Cultured Cells --
19 chr1:57019200-57023600 Weak transcription ES-I3 Cell Line embryonic stem cell
20 chr1:57019200-57026000 Weak transcription H1 Cell Line embryonic stem cell
21 chr1:57019200-57027800 Weak transcription Fetal Brain Female brain
22 chr1:57019200-57028400 Weak transcription Aorta Aorta
23 chr1:57019200-57030400 Weak transcription HSMM muscle
24 chr1:57019400-57023200 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
25 chr1:57019400-57023400 Weak transcription Fetal Adrenal Gland Adrenal Gland
26 chr1:57019400-57024000 Weak transcription Fetal Muscle Leg muscle
27 chr1:57019400-57027400 Weak transcription Lung lung
28 chr1:57019400-57027600 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
29 chr1:57019400-57030000 Weak transcription Osteobl bone
30 chr1:57019400-57030200 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
31 chr1:57019600-57022000 Enhancers Brain Anterior Caudate brain
32 chr1:57019600-57022800 Weak transcription Brain Angular Gyrus brain
33 chr1:57019600-57023600 Weak transcription Right Ventricle heart
34 chr1:57019600-57027000 Weak transcription Skeletal Muscle Male skeletal muscle
35 chr1:57019600-57027400 Weak transcription Skeletal Muscle Female skeletal muscle
36 chr1:57019600-57027800 Weak transcription Fetal Brain Male brain
37 chr1:57019600-57028000 Weak transcription Fetal Lung lung
38 chr1:57019600-57028400 Enhancers Liver Liver
39 chr1:57019800-57022400 Weak transcription Ovary ovary
40 chr1:57019800-57023800 Weak transcription HepG2 liver
41 chr1:57019800-57031400 Weak transcription Placenta Amnion Placenta Amnion
42 chr1:57020000-57028000 Weak transcription Colon Smooth Muscle Colon
43 chr1:57020000-57028800 Weak transcription Stomach Mucosa stomach
44 chr1:57020200-57022000 Enhancers Brain Inferior Temporal Lobe brain
45 chr1:57020200-57031800 Weak transcription Placenta Placenta
46 chr1:57020400-57021800 Enhancers iPS-18 Cell Line embryonic stem cell
47 chr1:57020400-57022000 Enhancers Brain Dorsolateral Prefrontal Cortex brain
48 chr1:57020400-57029000 Weak transcription Fetal Stomach stomach
49 chr1:57020600-57023800 Enhancers HUES6 Cell Line embryonic stem cell
50 chr1:57020800-57021800 Enhancers iPS-20b Cell Line embryonic stem cell

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Last update: Aug 31, 2015