Variant report

Variant	rs12089341
Chromosome Location	chr1:217362127-217362128
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs12067000	1.00[AMR][1000 genomes]
rs12070894	1.00[AMR][1000 genomes]
rs12075501	1.00[AMR][1000 genomes]
rs12083523	1.00[AMR][1000 genomes]
rs12092821	1.00[AMR][1000 genomes]
rs12094801	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv549207	chr1:217333272-217455903	Weak transcription Active TSS Enhancers Flanking Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1003559	chr1:217354095-217418732	Enhancers Weak transcription	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:217360600-217362200	Enhancers	Stomach Smooth Muscle	stomach
2	chr1:217360800-217362200	Enhancers	Colon Smooth Muscle	Colon
3	chr1:217360800-217362200	Enhancers	Fetal Stomach	stomach
4	chr1:217360800-217362400	Enhancers	Fetal Heart	heart
5	chr1:217361200-217362200	Enhancers	Cortex derived primary cultured neurospheres	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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