Variant report

Variant rs12090048
Chromosome Location chr1:162106139-162106140
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:52 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:162097600-162106600 Weak transcription H1 Cell Line embryonic stem cell
2 chr1:162098800-162107800 Enhancers Liver Liver
3 chr1:162098800-162109200 Enhancers Breast Myoepithelial Primary Cells Breast
4 chr1:162099200-162106800 Weak transcription ES-WA7 Cell Line embryonic stem cell
5 chr1:162099200-162106800 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
6 chr1:162100000-162109400 Enhancers Cortex derived primary cultured neurospheres brain
7 chr1:162101600-162106200 Weak transcription Duodenum Smooth Muscle Duodenum
8 chr1:162101800-162106200 Weak transcription Small Intestine intestine
9 chr1:162101800-162106800 Enhancers Hela-S3 cervix
10 chr1:162102000-162106400 Weak transcription Fetal Kidney kidney
11 chr1:162102000-162107000 Weak transcription Brain Inferior Temporal Lobe brain
12 chr1:162102200-162106400 Weak transcription Rectal Smooth Muscle rectum
13 chr1:162102200-162106400 Weak transcription Stomach Mucosa stomach
14 chr1:162102200-162107000 Weak transcription Gastric stomach
15 chr1:162102400-162106200 Weak transcription Colon Smooth Muscle Colon
16 chr1:162102800-162107200 Weak transcription Brain Substantia Nigra brain
17 chr1:162103600-162106200 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
18 chr1:162103800-162106200 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
19 chr1:162103800-162106200 Weak transcription Muscle Satellite Cultured Cells --
20 chr1:162103800-162106200 Weak transcription HUVEC blood vessel
21 chr1:162104000-162106200 Weak transcription HSMM muscle
22 chr1:162104600-162106400 Weak transcription Adipose Nuclei Adipose
23 chr1:162104600-162106600 Weak transcription Aorta Aorta
24 chr1:162104800-162106200 Weak transcription HUES6 Cell Line embryonic stem cell
25 chr1:162104800-162106400 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
26 chr1:162104800-162106400 Weak transcription Sigmoid Colon Sigmoid Colon
27 chr1:162104800-162106600 Weak transcription H9 Cell Line embryonic stem cell
28 chr1:162104800-162107000 Weak transcription Lung lung
29 chr1:162104800-162108600 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
30 chr1:162104800-162108800 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
31 chr1:162105000-162106200 Weak transcription Fetal Heart heart
32 chr1:162105000-162106400 Weak transcription Fetal Adrenal Gland Adrenal Gland
33 chr1:162105000-162107600 Enhancers Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
34 chr1:162105200-162106400 Weak transcription Brain Angular Gyrus brain
35 chr1:162105200-162106800 Weak transcription Fetal Intestine Large intestine
36 chr1:162105400-162106400 Weak transcription Fetal Intestine Small intestine
37 chr1:162105400-162106400 Enhancers A549 lung
38 chr1:162105400-162106400 Weak transcription HSMMtube muscle
39 chr1:162105400-162106800 Weak transcription Pancreas Pancrea
40 chr1:162105400-162109600 Enhancers Ganglion Eminence derived primary cultured neurospheres brain
41 chr1:162105400-162114600 Weak transcription Fetal Brain Female brain
42 chr1:162105600-162106600 Weak transcription Right Atrium heart
43 chr1:162105600-162107000 Weak transcription Left Ventricle heart
44 chr1:162105800-162107200 Enhancers HUES48 Cell Line embryonic stem cell
45 chr1:162105800-162107600 Enhancers ES-UCSF4 Cell Line embryonic stem cell
46 chr1:162105800-162107800 Enhancers ES-I3 Cell Line embryonic stem cell
47 chr1:162105800-162107800 Enhancers HUES64 Cell Line embryonic stem cell
48 chr1:162105800-162107800 Enhancers Foreskin Fibroblast Primary Cells skin01 Skin
49 chr1:162105800-162108000 Enhancers iPS-20b Cell Line embryonic stem cell
50 chr1:162105800-162108200 Enhancers H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived

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