The 2.0 version of rSNPBase

Variant report

Variant rs12090360
Chromosome Location chr1:95465732-95465733
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:48 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:95429000-95467600 Weak transcription Stomach Smooth Muscle stomach
2 chr1:95447000-95490800 Weak transcription Fetal Intestine Large intestine
3 chr1:95448200-95491000 Weak transcription Primary B cells from cord blood blood
4 chr1:95452600-95467000 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
5 chr1:95452800-95468400 Weak transcription Fetal Intestine Small intestine
6 chr1:95453600-95468400 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
7 chr1:95454000-95467600 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
8 chr1:95455200-95473600 Weak transcription Gastric stomach
9 chr1:95455400-95467800 Weak transcription Brain Substantia Nigra brain
10 chr1:95455600-95467600 Weak transcription Brain Hippocampus Middle brain
11 chr1:95455800-95467800 Weak transcription Sigmoid Colon Sigmoid Colon
12 chr1:95457000-95468600 Weak transcription Pancreatic Islets Pancreatic Islet
13 chr1:95459400-95465800 Weak transcription Esophagus oesophagus
14 chr1:95459400-95467600 Weak transcription Ovary ovary
15 chr1:95459600-95473000 Weak transcription Aorta Aorta
16 chr1:95459600-95473000 Weak transcription Pancreas Pancrea
17 chr1:95460200-95467600 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
18 chr1:95460400-95467600 Weak transcription Right Atrium heart
19 chr1:95460400-95467600 Weak transcription Right Ventricle heart
20 chr1:95460400-95467600 Weak transcription Skeletal Muscle Male skeletal muscle
21 chr1:95460400-95467800 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
22 chr1:95460400-95478400 Weak transcription Left Ventricle heart
23 chr1:95460600-95468000 Weak transcription Adipose Nuclei Adipose
24 chr1:95461200-95469600 Enhancers Cortex derived primary cultured neurospheres brain
25 chr1:95461400-95468000 Weak transcription NH-A brain
26 chr1:95461600-95466000 Weak transcription Primary T helper naive cells fromperipheralblood blood
27 chr1:95461600-95467400 Weak transcription Fetal Kidney kidney
28 chr1:95461600-95467600 Weak transcription Fetal Adrenal Gland Adrenal Gland
29 chr1:95463000-95465800 Enhancers H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
30 chr1:95463200-95466200 Enhancers H9 Derived Neuron Cultured Cells ES cell derived
31 chr1:95463400-95467800 Weak transcription iPS-20b Cell Line embryonic stem cell
32 chr1:95463600-95468000 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
33 chr1:95463800-95468000 Weak transcription HUES64 Cell Line embryonic stem cell
34 chr1:95464000-95466400 Weak transcription ES-I3 Cell Line embryonic stem cell
35 chr1:95464000-95473000 Weak transcription Lung lung
36 chr1:95464200-95466800 Enhancers Ganglion Eminence derived primary cultured neurospheres brain
37 chr1:95464800-95467200 Enhancers iPS-18 Cell Line embryonic stem cell
38 chr1:95465200-95467800 Weak transcription H1 Cell Line embryonic stem cell
39 chr1:95465400-95467600 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
40 chr1:95465400-95467800 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
41 chr1:95465600-95466000 Weak transcription Breast Myoepithelial Primary Cells Breast
42 chr1:95465600-95467400 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
43 chr1:95465600-95467400 Weak transcription Fetal Stomach stomach
44 chr1:95465600-95467600 Weak transcription Fetal Muscle Leg muscle
45 chr1:95465600-95467600 Weak transcription NHLF lung
46 chr1:95465600-95467800 Weak transcription Fetal Muscle Trunk muscle
47 chr1:95465600-95468000 Weak transcription HSMMtube muscle
48 chr1:95465600-95468200 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived

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Last update: Aug 31, 2015