Variant report

Variant rs12090621
Chromosome Location chr1:162105185-162105186
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:48 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:162097600-162106600 Weak transcription H1 Cell Line embryonic stem cell
2 chr1:162098800-162107800 Enhancers Liver Liver
3 chr1:162098800-162109200 Enhancers Breast Myoepithelial Primary Cells Breast
4 chr1:162099200-162105400 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
5 chr1:162099200-162105800 Weak transcription HUES64 Cell Line embryonic stem cell
6 chr1:162099200-162106800 Weak transcription ES-WA7 Cell Line embryonic stem cell
7 chr1:162099200-162106800 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
8 chr1:162100000-162109400 Enhancers Cortex derived primary cultured neurospheres brain
9 chr1:162100800-162105400 Enhancers Fetal Intestine Small intestine
10 chr1:162101600-162106200 Weak transcription Duodenum Smooth Muscle Duodenum
11 chr1:162101800-162106200 Weak transcription Small Intestine intestine
12 chr1:162101800-162106800 Enhancers Hela-S3 cervix
13 chr1:162102000-162106400 Weak transcription Fetal Kidney kidney
14 chr1:162102000-162107000 Weak transcription Brain Inferior Temporal Lobe brain
15 chr1:162102200-162105600 Enhancers HepG2 liver
16 chr1:162102200-162106400 Weak transcription Rectal Smooth Muscle rectum
17 chr1:162102200-162106400 Weak transcription Stomach Mucosa stomach
18 chr1:162102200-162107000 Weak transcription Gastric stomach
19 chr1:162102400-162106200 Weak transcription Colon Smooth Muscle Colon
20 chr1:162102800-162105800 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
21 chr1:162102800-162107200 Weak transcription Brain Substantia Nigra brain
22 chr1:162103000-162105400 Enhancers HSMMtube muscle
23 chr1:162103600-162105200 Enhancers Fetal Intestine Large intestine
24 chr1:162103600-162105400 Enhancers Right Ventricle heart
25 chr1:162103600-162106200 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
26 chr1:162103800-162106200 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
27 chr1:162103800-162106200 Weak transcription Muscle Satellite Cultured Cells --
28 chr1:162103800-162106200 Weak transcription HUVEC blood vessel
29 chr1:162104000-162105400 Enhancers Pancreas Pancrea
30 chr1:162104000-162105600 Enhancers Left Ventricle heart
31 chr1:162104000-162105800 Weak transcription HUES48 Cell Line embryonic stem cell
32 chr1:162104000-162106200 Weak transcription HSMM muscle
33 chr1:162104200-162106000 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
34 chr1:162104600-162105800 Weak transcription iPS-20b Cell Line embryonic stem cell
35 chr1:162104600-162105800 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
36 chr1:162104600-162106400 Weak transcription Adipose Nuclei Adipose
37 chr1:162104600-162106600 Weak transcription Aorta Aorta
38 chr1:162104800-162106200 Weak transcription HUES6 Cell Line embryonic stem cell
39 chr1:162104800-162106400 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
40 chr1:162104800-162106400 Weak transcription Sigmoid Colon Sigmoid Colon
41 chr1:162104800-162106600 Weak transcription H9 Cell Line embryonic stem cell
42 chr1:162104800-162107000 Weak transcription Lung lung
43 chr1:162104800-162108600 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
44 chr1:162104800-162108800 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
45 chr1:162105000-162105400 Weak transcription Right Atrium heart
46 chr1:162105000-162106200 Weak transcription Fetal Heart heart
47 chr1:162105000-162106400 Weak transcription Fetal Adrenal Gland Adrenal Gland
48 chr1:162105000-162107600 Enhancers Breast variant Human Mammary Epithelial Cells (vHMEC) Breast

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