Variant report

Variant	rs12090681
Chromosome Location	chr1:159724169-159724170
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs11486167	0.81[AFR][1000 genomes]
rs12064000	0.98[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3093066	0.82[YRI][hapmap];0.80[AFR][1000 genomes]
rs3093069	0.87[AFR][1000 genomes]
rs3935940	0.95[YRI][hapmap];0.98[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73022790	0.85[AFR][1000 genomes]
rs73026821	0.88[AFR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1005195	chr1:159452759-159910337	Active TSS Enhancers Weak transcription Genic enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	90 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:159718600-159725200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr1:159722800-159726200	Weak transcription	Adipose Nuclei	Adipose
3	chr1:159723000-159724600	Enhancers	Placenta	Placenta
4	chr1:159723400-159725200	Weak transcription	Primary neutrophils fromperipheralblood	blood
5	chr1:159723600-159726800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr1:159723800-159725400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr1:159723800-159725400	Weak transcription	Pancreas	Pancrea
8	chr1:159723800-159726200	Weak transcription	Spleen	Spleen
9	chr1:159724000-159725200	Enhancers	Liver	Liver
10	chr1:159724000-159725200	Weak transcription	Fetal Intestine Large	intestine
11	chr1:159724000-159725200	Weak transcription	Rectal Mucosa Donor 29	rectum
12	chr1:159724000-159725400	Weak transcription	Fetal Intestine Small	intestine
13	chr1:159724000-159725400	Weak transcription	Small Intestine	intestine
14	chr1:159724000-159726200	Weak transcription	Duodenum Mucosa	Duodenum

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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