Variant report

Variant	rs12091126
Chromosome Location	chr1:185807680-185807681
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs10911779	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs11586768	1.00[JPT][hapmap]
rs12070701	1.00[YRI][hapmap]
rs12092575	1.00[YRI][hapmap]
rs12097237	1.00[YRI][hapmap]
rs12134019	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv548398	chr1:185136458-186003094	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	69 gene(s)	inside rSNPs	diseases
2	esv3424090	chr1:185679718-186270877	Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Strong transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:185803200-185850000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr1:185803800-185812000	Weak transcription	Aorta	Aorta
3	chr1:185804400-185809600	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr1:185804600-185812000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr1:185805600-185818200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr1:185806800-185807800	Enhancers	ES-I3 Cell Line	embryonic stem cell
7	chr1:185807200-185812000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
8	chr1:185807200-185812200	Weak transcription	HUES48 Cell Line	embryonic stem cell
9	chr1:185807400-185812000	Weak transcription	HUES6 Cell Line	embryonic stem cell
10	chr1:185807400-185812400	Weak transcription	HUVEC	blood vessel
11	chr1:185807400-185812600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr1:185807600-185812200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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