Variant report

Variant	rs12091742
Chromosome Location	chr1:61642324-61642325
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:61637787..61640329-chr1:61641954..61643964,3	K562	blood:
2	chr1:61585959..61588154-chr1:61641270..61643000,2	K562	blood:

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs11207695	0.86[CHB][hapmap]
rs11207702	0.86[CHB][hapmap]
rs12021605	0.86[CHB][hapmap]
rs12033718	0.86[CHB][hapmap]
rs1412712	0.86[CHB][hapmap]
rs17121702	0.86[CHB][hapmap]
rs17121705	0.86[CHB][hapmap]
rs1832184	0.86[CHB][hapmap]
rs4915731	0.86[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1008634	chr1:61613785-61671468	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:63 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:61606000-61649000	Weak transcription	Spleen	Spleen
2	chr1:61619200-61649000	Weak transcription	Rectal Mucosa Donor 29	rectum
3	chr1:61624600-61650400	Weak transcription	Primary hematopoietic stem cells	blood
4	chr1:61636200-61644200	Weak transcription	Esophagus	oesophagus
5	chr1:61636200-61644200	Weak transcription	Gastric	stomach
6	chr1:61636200-61644200	Weak transcription	Pancreas	Pancrea
7	chr1:61636200-61648800	Weak transcription	Placenta	Placenta
8	chr1:61636200-61649000	Weak transcription	Sigmoid Colon	Sigmoid Colon
9	chr1:61636600-61644400	Weak transcription	Stomach Mucosa	stomach
10	chr1:61636600-61649000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr1:61636600-61649200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr1:61636800-61647200	Weak transcription	A549	lung
13	chr1:61636800-61647200	Weak transcription	HUVEC	blood vessel
14	chr1:61637400-61649000	Weak transcription	Duodenum Mucosa	Duodenum
15	chr1:61637600-61643600	Weak transcription	Ovary	ovary
16	chr1:61637600-61649000	Weak transcription	NHEK	skin
17	chr1:61637800-61649000	Weak transcription	Fetal Intestine Small	intestine
18	chr1:61638000-61649800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr1:61638200-61650000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
20	chr1:61638400-61648800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
21	chr1:61638800-61652400	Weak transcription	Small Intestine	intestine
22	chr1:61639000-61643400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
23	chr1:61639000-61647200	Weak transcription	NHDF-Ad	bronchial
24	chr1:61639000-61647800	Weak transcription	NHLF	lung
25	chr1:61639200-61647000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
26	chr1:61639200-61647200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
27	chr1:61639600-61646800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
28	chr1:61640200-61643400	Weak transcription	Stomach Smooth Muscle	stomach
29	chr1:61640200-61644200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
30	chr1:61640200-61644400	Weak transcription	Aorta	Aorta
31	chr1:61640200-61646800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
32	chr1:61640400-61644200	Weak transcription	Brain Angular Gyrus	brain
33	chr1:61640400-61644600	Weak transcription	Fetal Muscle Trunk	muscle
34	chr1:61640400-61647200	Weak transcription	Adipose Nuclei	Adipose
35	chr1:61640600-61643200	Weak transcription	Duodenum Smooth Muscle	Duodenum
36	chr1:61640600-61644200	Weak transcription	Brain Cingulate Gyrus	brain
37	chr1:61640600-61646400	Weak transcription	Fetal Muscle Leg	muscle
38	chr1:61640600-61649000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
39	chr1:61640800-61643000	Weak transcription	Skeletal Muscle Male	skeletal muscle
40	chr1:61640800-61643400	Weak transcription	Liver	Liver
41	chr1:61641000-61642400	Enhancers	Fetal Heart	heart
42	chr1:61641400-61646200	Weak transcription	HepG2	liver
43	chr1:61641800-61642800	Weak transcription	Brain Hippocampus Middle	brain
44	chr1:61641800-61642800	Weak transcription	Fetal Brain Female	brain
45	chr1:61641800-61643400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
46	chr1:61641800-61643600	Weak transcription	Psoas Muscle	Psoas
47	chr1:61641800-61644000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
48	chr1:61641800-61644200	Weak transcription	Brain Germinal Matrix	brain
49	chr1:61641800-61644200	Weak transcription	Right Atrium	heart
50	chr1:61641800-61647400	Weak transcription	Rectal Smooth Muscle	rectum

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