Variant report

Variant	rs12092214
Chromosome Location	chr1:159792593-159792594
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs12061921	1.00[CEU][hapmap];0.93[EUR][1000 genomes]
rs12080483	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs12083595	1.00[CEU][hapmap]
rs12092557	1.00[CEU][hapmap];0.93[EUR][1000 genomes]
rs3935782	0.93[EUR][1000 genomes]
rs4076130	0.93[EUR][1000 genomes]
rs61689224	0.93[EUR][1000 genomes]
rs73028938	0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1005195	chr1:159452759-159910337	Active TSS Enhancers Weak transcription Genic enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
2	nsv521503	chr1:159762120-159795478	Bivalent Enhancer Active TSS Enhancers Flanking Active TSS Weak transcription Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:159774800-159796000	Weak transcription	Right Atrium	heart
2	chr1:159775800-159793400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
3	chr1:159779600-159794800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
4	chr1:159785400-159792800	Weak transcription	Spleen	Spleen
5	chr1:159788600-159793000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
6	chr1:159789800-159793000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr1:159791000-159795800	Enhancers	Primary T cells fromperipheralblood	blood
8	chr1:159791000-159796600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
9	chr1:159791200-159793200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
10	chr1:159792000-159796000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr1:159792200-159793400	Enhancers	Rectal Mucosa Donor 31	rectum
12	chr1:159792200-159793800	Bivalent Enhancer	Fetal Muscle Leg	muscle
13	chr1:159792400-159792800	Enhancers	Lung	lung
14	chr1:159792400-159793200	Bivalent Enhancer	Fetal Muscle Trunk	muscle
15	chr1:159792400-159793600	Enhancers	Placenta Amnion	Placenta Amnion
16	chr1:159792400-159794200	Enhancers	Esophagus	oesophagus
17	chr1:159792400-159794200	Enhancers	Fetal Intestine Small	intestine
18	chr1:159792400-159796600	Enhancers	Placenta	Placenta

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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