Variant report

Variant	rs12092360
Chromosome Location	chr1:47208282-47208283
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-CYP4B1-1	chr1:47208001-47208805	NONHSAT003036

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10890410	0.82[CHB][hapmap]
rs11211343	1.00[CEU][hapmap];0.82[CHB][hapmap]
rs11211347	0.86[ASN][1000 genomes]
rs11801744	1.00[CEU][hapmap];0.82[CHB][hapmap]
rs12059860	1.00[CEU][hapmap]
rs12060032	0.89[ASN][1000 genomes]
rs12566278	1.00[CEU][hapmap]
rs1258055	1.00[CEU][hapmap]
rs1258058	0.82[CHB][hapmap]
rs1258064	1.00[CEU][hapmap]
rs1258065	1.00[CEU][hapmap]
rs1258066	1.00[CEU][hapmap]
rs1258072	1.00[CEU][hapmap];0.87[CHB][hapmap]
rs1273237	1.00[CEU][hapmap];0.82[CHB][hapmap]
rs13374909	1.00[CEU][hapmap]
rs1933932	1.00[CEU][hapmap];0.82[CHB][hapmap]
rs2241863	1.00[CEU][hapmap];0.82[CHB][hapmap]
rs2241864	1.00[CEU][hapmap];0.82[CHB][hapmap]
rs2476155	1.00[CEU][hapmap]
rs3766218	1.00[CEU][hapmap];0.82[CHB][hapmap]
rs3766220	1.00[CEU][hapmap]
rs3766222	1.00[CEU][hapmap]
rs3766223	0.81[CHB][hapmap]
rs58920789	0.89[ASN][1000 genomes]
rs60239027	0.89[ASN][1000 genomes]
rs604233	1.00[CEU][hapmap]
rs604264	1.00[CEU][hapmap]
rs629412	1.00[CEU][hapmap];0.82[CHB][hapmap]
rs631368	1.00[CEU][hapmap];0.82[CHB][hapmap]
rs631840	1.00[CEU][hapmap];0.82[CHB][hapmap]
rs636082	1.00[CEU][hapmap]
rs636122	1.00[CEU][hapmap];0.80[CHB][hapmap]
rs6677350	1.00[CEU][hapmap]
rs669647	1.00[CEU][hapmap]
rs685862	1.00[CEU][hapmap]
rs723333	1.00[CEU][hapmap];0.82[CHB][hapmap]
rs724309	1.00[CEU][hapmap]
rs736188	1.00[CEU][hapmap];0.81[CHB][hapmap]
rs9094	1.00[CEU][hapmap];0.81[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1001455	chr1:46828004-47326539	Active TSS Bivalent Enhancer Enhancers Bivalent/Poised TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
2	nsv534950	chr1:46828004-47326539	Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
3	nsv1013048	chr1:47132831-47377364	Genic enhancers Enhancers Active TSS Flanking Active TSS Strong transcription Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
4	nsv534955	chr1:47132831-47377364	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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