Variant report

Variant	rs1209319
Chromosome Location	chr10:27022755-27022756
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	TEAD4	chr10:27022725-27023602	HepG2	liver:	n/a	n/a
2	POLR2A	chr10:27022710-27023438	HepG2	liver:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:27020685..27022973-chr10:27138065..27140730,2	MCF-7	breast:
2	chr10:26986198..26989615-chr10:27022506..27024765,3	MCF-7	breast:

Variant related genes	Relation type
PDSS1	TF binding region
ENSG00000148459	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs2477301	0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3415799	chr10:26929831-27233591	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv933544	chr10:27005220-27111998	Weak transcription ZNF genes & repeats Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	esv2761585	chr10:27010701-27026012	Strong transcription Enhancers Weak transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:26987600-27024400	Weak transcription	Fetal Kidney	kidney
2	chr10:26987800-27031200	Weak transcription	NHDF-Ad	bronchial
3	chr10:26988000-27069600	Weak transcription	Colon Smooth Muscle	Colon
4	chr10:26989400-27031000	Weak transcription	Small Intestine	intestine
5	chr10:26994400-27040800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr10:26995400-27023000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr10:26995800-27026600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
8	chr10:26996000-27026600	Strong transcription	Primary monocytes fromperipheralblood	blood
9	chr10:26996200-27026200	Strong transcription	Monocytes-CD14+_RO01746	blood
10	chr10:26996200-27028000	Weak transcription	Psoas Muscle	Psoas
11	chr10:26996600-27023600	Weak transcription	Fetal Heart	heart
12	chr10:26997200-27022800	Weak transcription	Placenta Amnion	Placenta Amnion
13	chr10:26997200-27024400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
14	chr10:26997600-27054400	Weak transcription	Fetal Brain Male	brain
15	chr10:26999800-27037400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr10:27001000-27031800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
17	chr10:27001200-27041200	Strong transcription	Fetal Thymus	thymus
18	chr10:27001800-27041200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
19	chr10:27002200-27023400	Strong transcription	HUES64 Cell Line	embryonic stem cell
20	chr10:27004200-27031200	Weak transcription	Hela-S3	cervix
21	chr10:27004400-27022800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
22	chr10:27006200-27023800	Weak transcription	NHLF	lung
23	chr10:27007800-27041200	Strong transcription	Dnd41	blood
24	chr10:27008800-27022800	Strong transcription	HUES6 Cell Line	embryonic stem cell
25	chr10:27009600-27032200	Strong transcription	Fetal Muscle Trunk	muscle
26	chr10:27010000-27034600	Strong transcription	Thymus	Thymus
27	chr10:27011000-27023000	Weak transcription	Pancreas	Pancrea
28	chr10:27011000-27024200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
29	chr10:27011000-27024200	Weak transcription	Aorta	Aorta
30	chr10:27011000-27027000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
31	chr10:27011200-27023000	Weak transcription	Gastric	stomach
32	chr10:27011200-27026200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
33	chr10:27011200-27026400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
34	chr10:27011200-27047400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
35	chr10:27011400-27023600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
36	chr10:27011400-27027000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
37	chr10:27012000-27044400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
38	chr10:27014400-27022800	Weak transcription	Brain Hippocampus Middle	brain
39	chr10:27014400-27023200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
40	chr10:27014800-27024200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
41	chr10:27014800-27024200	Weak transcription	Placenta	Placenta
42	chr10:27015000-27024000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
43	chr10:27015200-27035400	Weak transcription	Stomach Mucosa	stomach
44	chr10:27015800-27032400	Strong transcription	Fetal Stomach	stomach
45	chr10:27016000-27027600	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
46	chr10:27016400-27023000	Weak transcription	Muscle Satellite Cultured Cells	--
47	chr10:27018000-27023000	Strong transcription	HUES48 Cell Line	embryonic stem cell
48	chr10:27018000-27025800	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
49	chr10:27018000-27036400	Strong transcription	K562	blood
50	chr10:27018000-27038800	Strong transcription	Rectal Mucosa Donor 29	rectum

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links