Variant report

Variant	rs1209413
Chromosome Location	chr6:134095681-134095682
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs1208226	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs72978181	0.84[ASN][1000 genomes]
rs9389095	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830812	chr6:133993897-134165407	Enhancers Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	esv34122	chr6:134089019-134378252	Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Enhancers Flanking Active TSS Bivalent/Poised TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:134086200-134112400	Weak transcription	Aorta	Aorta
2	chr6:134091000-134100000	Weak transcription	Rectal Smooth Muscle	rectum
3	chr6:134091200-134095800	Weak transcription	HSMM	muscle
4	chr6:134094800-134097000	Weak transcription	Fetal Lung	lung
5	chr6:134095000-134096200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr6:134095000-134096200	Enhancers	HUVEC	blood vessel
7	chr6:134095200-134096000	Enhancers	Hela-S3	cervix
8	chr6:134095200-134096200	Enhancers	Muscle Satellite Cultured Cells	--
9	chr6:134095400-134095800	Enhancers	A549	lung
10	chr6:134095400-134095800	Enhancers	NH-A	brain
11	chr6:134095400-134096000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr6:134095400-134096000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr6:134095400-134096000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr6:134095400-134096000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr6:134095400-134096000	Enhancers	NHEK	skin
16	chr6:134095400-134096000	Enhancers	Osteobl	bone
17	chr6:134095400-134096200	Enhancers	HMEC	breast
18	chr6:134095600-134096000	Enhancers	NHDF-Ad	bronchial
19	chr6:134095600-134096600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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