Variant report

Variant	rs12094153
Chromosome Location	chr1:175094025-175094026
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:175091685..175094091-chr1:175094460..175097259,2	K562	blood:
2	chr1:174997229..174999429-chr1:175092818..175094632,2	K562	blood:
3	chr1:175050894..175052513-chr1:175093322..175096065,2	MCF-7	breast:

Extended variants
information (count: 11 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10798333	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10912890	1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12087735	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2157588	0.86[ASW][hapmap];0.82[CEU][hapmap];0.82[TSI][hapmap];0.82[YRI][hapmap]
rs6660052	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6670010	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7515770	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7521981	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv825487	chr1:175031609-175113572	Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv3609	chr1:175046412-175094406	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv508648	chr1:175056387-175121913	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs12094153	TNR	cis	cerebellum	SCAN

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:175084600-175095600	Weak transcription	Right Atrium	heart
2	chr1:175084800-175097000	Weak transcription	Gastric	stomach
3	chr1:175086400-175099600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr1:175091200-175098600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr1:175093000-175094800	Enhancers	Primary hematopoietic stem cells short term culture	blood
6	chr1:175093200-175095600	Weak transcription	Lung	lung
7	chr1:175093400-175095600	Weak transcription	Spleen	Spleen
8	chr1:175093800-175094200	Flanking Active TSS	Primary monocytes fromperipheralblood	blood
9	chr1:175093800-175094200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr1:175093800-175094600	Enhancers	Fetal Lung	lung
11	chr1:175093800-175094600	Enhancers	Fetal Stomach	stomach
12	chr1:175093800-175094600	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
13	chr1:175093800-175094800	Enhancers	Primary neutrophils fromperipheralblood	blood
14	chr1:175093800-175095000	Enhancers	Adipose Nuclei	Adipose
15	chr1:175093800-175096200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr1:175094000-175094200	Enhancers	Colon Smooth Muscle	Colon
17	chr1:175094000-175094400	Enhancers	HUES48 Cell Line	embryonic stem cell
18	chr1:175094000-175094400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr1:175094000-175094400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
20	chr1:175094000-175100000	Enhancers	Liver	Liver

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