Variant report

Variant	rs12094178
Chromosome Location	chr1:226996981-226996982
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:226992626..226995987-chr1:226996668..226999035,4	K562	blood:
2	chr1:226994914..226997823-chr1:226999352..227001861,2	MCF-7	breast:
3	chr1:226996423..226998439-chr1:226999646..227002878,3	MCF-7	breast:
4	chr1:226995906..226998564-chr1:226999245..227000818,2	K562	blood:

rs_ID	r²[population]
rs10916055	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10916058	1.00[AMR][1000 genomes]
rs12057817	1.00[AMR][1000 genomes]
rs12085233	1.00[AMR][1000 genomes]
rs12093600	1.00[YRI][hapmap];0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1341281	1.00[AMR][1000 genomes]
rs1341282	1.00[AMR][1000 genomes]
rs6426539	1.00[AMR][1000 genomes]

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:226987200-227001400	Weak transcription	Right Atrium	heart
2	chr1:226987400-226997400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr1:226989400-227002800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
4	chr1:226992800-227003200	Weak transcription	Lung	lung
5	chr1:226993600-227001400	Weak transcription	Thymus	Thymus
6	chr1:226994800-227007000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr1:226995000-226997400	Weak transcription	Stomach Smooth Muscle	stomach
8	chr1:226995000-226998200	Weak transcription	Fetal Thymus	thymus
9	chr1:226995000-227003400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr1:226995200-226998200	Weak transcription	Placenta Amnion	Placenta Amnion
11	chr1:226995600-226997200	Weak transcription	Brain Anterior Caudate	brain
12	chr1:226995800-227009800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr1:226996000-226998400	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
14	chr1:226996200-226997200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr1:226996400-226998200	Enhancers	Brain Hippocampus Middle	brain
16	chr1:226996600-226997000	Enhancers	Brain Angular Gyrus	brain
17	chr1:226996600-226999200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
18	chr1:226996600-226999200	Enhancers	Cortex derived primary cultured neurospheres	brain
19	chr1:226996800-226997000	Bivalent Enhancer	Fetal Stomach	stomach
20	chr1:226996800-226997400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
21	chr1:226996800-226998200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
22	chr1:226996800-226998200	Enhancers	Fetal Muscle Trunk	muscle
23	chr1:226996800-226999000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
24	chr1:226996800-226999200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

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