Variant report

Variant	rs12095660
Chromosome Location	chr1:169375948-169375949
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10919089	1.00[EUR][1000 genomes]
rs10919142	1.00[EUR][1000 genomes]
rs10919161	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs10919171	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs12068499	1.00[EUR][1000 genomes]
rs12071302	1.00[EUR][1000 genomes]
rs12073238	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs12078569	0.88[AFR][1000 genomes]
rs12081893	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs12083695	0.97[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs12088527	1.00[EUR][1000 genomes]
rs12088713	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs16862184	0.97[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs16862197	0.97[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs975991	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv10418	chr1:169059628-169621268	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
2	nsv872531	chr1:169191860-169388193	Active TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv831871	chr1:169320673-169486680	Weak transcription Strong transcription Active TSS Flanking Active TSS Enhancers Bivalent/Poised TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:169360800-169395200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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