Variant report

Variant	rs12095809
Chromosome Location	chr1:102282277-102282278
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs12074027	1.00[AFR][1000 genomes]
rs12077612	1.00[AFR][1000 genomes]
rs12082784	1.00[AFR][1000 genomes]
rs12084662	1.00[AFR][1000 genomes]
rs12084765	1.00[AFR][1000 genomes]
rs12088855	1.00[AFR][1000 genomes]
rs12091840	1.00[AFR][1000 genomes]
rs12093850	1.00[AFR][1000 genomes]
rs17125460	1.00[AFR][1000 genomes]
rs17125467	1.00[AFR][1000 genomes]
rs17125483	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv522921	chr1:102170295-102876392	Weak transcription Enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	nsv871513	chr1:102243101-102302831	Enhancers Weak transcription	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv871555	chr1:102255522-102304094	Weak transcription Enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv546898	chr1:102274276-102304152	Enhancers Weak transcription	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv546899	chr1:102276143-102304094	Weak transcription Enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:102268400-102311200	Weak transcription	Fetal Intestine Large	intestine

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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