Variant report
| Variant | rs12096018 |
|---|---|
| Chromosome Location | chr1:74370394-74370395 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:26)
| rs_ID | r2[population] |
|---|---|
| rs10493526 | 0.83[EUR][1000 genomes] |
| rs10493528 | 0.86[EUR][1000 genomes] |
| rs11210366 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11210367 | 0.84[EUR][1000 genomes] |
| rs11210368 | 0.83[EUR][1000 genomes] |
| rs11210369 | 0.84[EUR][1000 genomes] |
| rs11210370 | 0.84[EUR][1000 genomes] |
| rs11210372 | 0.83[EUR][1000 genomes] |
| rs12062996 | 0.84[EUR][1000 genomes] |
| rs12076161 | 0.84[EUR][1000 genomes] |
| rs12077198 | 0.84[EUR][1000 genomes] |
| rs12081389 | 0.83[EUR][1000 genomes] |
| rs12082647 | 0.83[EUR][1000 genomes] |
| rs12120978 | 0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12130770 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs12137774 | 0.86[EUR][1000 genomes] |
| rs1340434 | 0.99[EUR][1000 genomes] |
| rs17521189 | 0.84[EUR][1000 genomes] |
| rs1768649 | 0.83[EUR][1000 genomes] |
| rs1768652 | 0.84[EUR][1000 genomes] |
| rs2733260 | 0.84[EUR][1000 genomes] |
| rs2803131 | 0.81[EUR][1000 genomes] |
| rs7544238 | 0.85[EUR][1000 genomes] |
| rs7544252 | 0.84[EUR][1000 genomes] |
| rs7550937 | 0.83[EUR][1000 genomes] |
| rs9660534 | 0.83[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1004451 | chr1:74107125-74874389 | Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 12 gene(s) | inside rSNPs | diseases |
| 2 | nsv534999 | chr1:74107125-74874389 | Weak transcription Enhancers ZNF genes & repeats Genic enhancers Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 12 gene(s) | inside rSNPs | diseases |
| 3 | nsv522147 | chr1:74338530-74983835 | Active TSS Flanking Active TSS Enhancers Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 16 gene(s) | inside rSNPs | diseases |
| 4 | nsv1398 | chr1:74353390-74398380 | Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 5 | esv2763561 | chr1:74362009-74396896 | Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats | Chromatin interactive region | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr1:74368000-74371200 | Weak transcription | Dnd41 | blood |
| 2 | chr1:74368000-74374200 | Weak transcription | H1 Derived Neuronal Progenitor Cultured Cells | ES cell derived |
