Variant report

Variant	rs12096060
Chromosome Location	chr6:145787712-145787713
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10458426	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10802322	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10802323	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10924462	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10924463	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11579188	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11586168	0.82[EUR][1000 genomes]
rs12065362	0.81[EUR][1000 genomes]
rs12065447	0.88[AFR][1000 genomes];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12145554	0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12746104	0.82[EUR][1000 genomes]
rs1416067	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1999895	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1999896	0.80[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs2153023	0.84[AFR][1000 genomes];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2153025	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2185072	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4384193	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4390145	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4654080	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4654190	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs61841876	0.82[EUR][1000 genomes]
rs6426267	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6426268	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6426269	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6677482	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6680336	0.84[AMR][1000 genomes]
rs7520116	0.80[AMR][1000 genomes]
rs7520201	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7522528	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7532447	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7533411	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7536171	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7539876	0.83[EUR][1000 genomes]
rs9660598	0.80[AMR][1000 genomes]
rs9661158	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1017166	chr6:145677071-145808448	Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Weak transcription ZNF genes & repeats Bivalent/Poised TSS Strong transcription	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv604838	chr6:145709371-145841146	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:145768200-145803800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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