Variant report

Variant	rs12097100
Chromosome Location	chr1:185621883-185621884
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MAX	chr1:185621467-185621958	HCT-116	colon:	n/a	n/a
2	CTCF	chr1:185621565-185621900	MCF-7	breast:	n/a	chr1:185621685-185621703 chr1:185621687-185621708
3	RAD21	chr1:185621385-185622009	HCT-116	colon:	n/a	chr1:185621686-185621705
4	CTCF	chr1:185621437-185621896	MCF-7	breast:	n/a	chr1:185621685-185621703 chr1:185621687-185621708
5	RAD21	chr1:185621488-185621939	H1-hESC	embryonic stem cell:	n/a	chr1:185621686-185621705
6	RAD21	chr1:185621454-185621900	A549	lung:	n/a	chr1:185621686-185621705
7	RAD21	chr1:185621435-185621921	MCF-7	breast:	n/a	chr1:185621686-185621705
8	RAD21	chr1:185621453-185621908	A549	lung:	n/a	chr1:185621686-185621705

No.	Distal block	Cell Line	Cell type
1	chr1:185621625..185622207-chr1:185664419..185664955,2	MCF-7	breast:
2	chr1:185621316..185622169-chr1:185639285..185639972,2	MCF-7	breast:
3	chr1:185621302..185622211-chr1:185649936..185650744,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000261729	TF binding region

Extended variants
information (count: 89 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:88)

rs_ID	r²[population]
rs10489716	1.00[EUR][1000 genomes]
rs12063917	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12074218	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1407428	1.00[EUR][1000 genomes]
rs16824455	1.00[EUR][1000 genomes]
rs16824458	1.00[EUR][1000 genomes]
rs16824488	1.00[EUR][1000 genomes]
rs16824497	1.00[EUR][1000 genomes]
rs1830622	1.00[EUR][1000 genomes]
rs1830623	1.00[EUR][1000 genomes]
rs1853247	1.00[EUR][1000 genomes]
rs2170858	1.00[EUR][1000 genomes]
rs28477118	1.00[EUR][1000 genomes]
rs28510615	1.00[EUR][1000 genomes]
rs55731570	1.00[EUR][1000 genomes]
rs55887884	1.00[EUR][1000 genomes]
rs56100961	1.00[EUR][1000 genomes]
rs56331179	1.00[EUR][1000 genomes]
rs56347630	1.00[EUR][1000 genomes]
rs56881574	1.00[EUR][1000 genomes]
rs57107751	1.00[EUR][1000 genomes]
rs57162167	1.00[EUR][1000 genomes]
rs57215320	1.00[EUR][1000 genomes]
rs57246058	1.00[EUR][1000 genomes]
rs57257586	1.00[EUR][1000 genomes]
rs57646829	1.00[EUR][1000 genomes]
rs57782754	1.00[EUR][1000 genomes]
rs58433773	1.00[EUR][1000 genomes]
rs58610741	1.00[EUR][1000 genomes]
rs59175860	1.00[EUR][1000 genomes]
rs59660733	1.00[EUR][1000 genomes]
rs59967839	1.00[EUR][1000 genomes]
rs60308365	1.00[EUR][1000 genomes]
rs60458315	1.00[EUR][1000 genomes]
rs60735946	1.00[EUR][1000 genomes]
rs61679640	1.00[EUR][1000 genomes]
rs61689983	1.00[EUR][1000 genomes]
rs6425004	1.00[EUR][1000 genomes]
rs6425005	1.00[EUR][1000 genomes]
rs6662552	1.00[AMR][1000 genomes]
rs6671094	1.00[EUR][1000 genomes]
rs6675691	1.00[EUR][1000 genomes]
rs6676349	1.00[EUR][1000 genomes]
rs6676522	1.00[EUR][1000 genomes]
rs6677183	1.00[EUR][1000 genomes]
rs6687115	1.00[AMR][1000 genomes]
rs6687211	1.00[AMR][1000 genomes]
rs6688298	1.00[EUR][1000 genomes]
rs6689359	1.00[EUR][1000 genomes]
rs6689777	1.00[AMR][1000 genomes]
rs6689817	1.00[AMR][1000 genomes]
rs6690475	1.00[EUR][1000 genomes]
rs6690559	1.00[EUR][1000 genomes]
rs6690714	1.00[EUR][1000 genomes]
rs6699893	1.00[AMR][1000 genomes]
rs6700856	1.00[EUR][1000 genomes]
rs6703750	1.00[EUR][1000 genomes]
rs73060487	1.00[EUR][1000 genomes]
rs73062512	1.00[EUR][1000 genomes]
rs73062516	1.00[EUR][1000 genomes]
rs73070519	1.00[EUR][1000 genomes]
rs73070522	1.00[EUR][1000 genomes]
rs73070527	1.00[EUR][1000 genomes]
rs73070547	1.00[EUR][1000 genomes]
rs73070548	1.00[EUR][1000 genomes]
rs73070567	1.00[EUR][1000 genomes]
rs73070598	1.00[EUR][1000 genomes]
rs73072012	1.00[EUR][1000 genomes]
rs73072023	1.00[EUR][1000 genomes]
rs73072049	1.00[EUR][1000 genomes]
rs73072063	1.00[EUR][1000 genomes]
rs73072067	1.00[EUR][1000 genomes]
rs74132958	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74132959	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74135337	1.00[EUR][1000 genomes]
rs74135346	1.00[EUR][1000 genomes]
rs74135350	1.00[EUR][1000 genomes]
rs74135351	1.00[EUR][1000 genomes]
rs74135359	1.00[EUR][1000 genomes]
rs74135362	1.00[EUR][1000 genomes]
rs74135365	1.00[EUR][1000 genomes]
rs7517811	1.00[EUR][1000 genomes]
rs7540727	1.00[EUR][1000 genomes]
rs7540773	1.00[EUR][1000 genomes]
rs7544162	1.00[EUR][1000 genomes]
rs7544394	1.00[EUR][1000 genomes]
rs7544808	1.00[EUR][1000 genomes]
rs959689	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv548398	chr1:185136458-186003094	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	69 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:185618800-185638800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr1:185620000-185622400	Weak transcription	Placenta	Placenta
3	chr1:185620000-185623000	Weak transcription	Pancreas	Pancrea
4	chr1:185620000-185623200	Weak transcription	Placenta Amnion	Placenta Amnion
5	chr1:185620000-185624200	Weak transcription	Psoas Muscle	Psoas
6	chr1:185620000-185632200	Weak transcription	HepG2	liver
7	chr1:185620400-185623000	Weak transcription	Fetal Intestine Small	intestine
8	chr1:185621400-185622400	Weak transcription	Fetal Heart	heart

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