Variant report

Variant	rs1209720
Chromosome Location	chr7:78417105-78417106
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs11981818	0.92[CEU][hapmap];0.85[JPT][hapmap];0.94[EUR][1000 genomes]
rs1207884	0.85[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1207885	0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1207887	0.84[CEU][hapmap];0.91[CHB][hapmap];0.88[CHD][hapmap];0.88[GIH][hapmap];0.95[JPT][hapmap];0.89[TSI][hapmap];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1207890	0.92[CEU][hapmap];0.87[CHB][hapmap]
rs1209400	0.92[CEU][hapmap];0.81[CHB][hapmap];0.86[JPT][hapmap];0.84[TSI][hapmap];0.91[EUR][1000 genomes]
rs2214557	0.96[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap]
rs37855	0.90[JPT][hapmap]
rs37859	0.82[CHD][hapmap];0.91[JPT][hapmap]
rs37861	0.91[JPT][hapmap]
rs37867	0.95[JPT][hapmap]
rs37876	0.90[JPT][hapmap]
rs37883	0.91[JPT][hapmap]
rs489403	0.92[CEU][hapmap];0.81[CHB][hapmap];0.86[JPT][hapmap];0.84[TSI][hapmap]
rs763518	0.96[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022199	chr7:78054639-78469370	Enhancers Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv538986	chr7:78054639-78469370	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv607657	chr7:78329795-78483211	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv949647	chr7:78406281-78495913	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:78416800-78418400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr7:78416800-78418400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr7:78416800-78418400	Enhancers	HMEC	breast
4	chr7:78417000-78417600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr7:78417000-78418400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr7:78417000-78418400	Enhancers	NHEK	skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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