The 2.0 version of rSNPBase

Variant report

Variant rs12097809
Chromosome Location chr1:173982672-173982673
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:106 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:173942200-173986200 Weak transcription Fetal Brain Male brain
2 chr1:173958600-173987200 Weak transcription Gastric stomach
3 chr1:173962000-173988400 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
4 chr1:173962200-173983200 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
5 chr1:173962200-173984200 Weak transcription Primary T cells from cord blood blood
6 chr1:173962200-173989000 Weak transcription Fetal Kidney kidney
7 chr1:173962200-173989600 Weak transcription H1 Cell Line embryonic stem cell
8 chr1:173962200-173989600 Weak transcription Aorta Aorta
9 chr1:173962200-173989800 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
10 chr1:173962200-173990400 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
11 chr1:173962400-173987800 Weak transcription HUES48 Cell Line embryonic stem cell
12 chr1:173962600-173986000 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
13 chr1:173962600-173988400 Weak transcription HUES64 Cell Line embryonic stem cell
14 chr1:173962600-173988600 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
15 chr1:173962600-173989400 Weak transcription HUES6 Cell Line embryonic stem cell
16 chr1:173962800-173989800 Weak transcription Placenta Placenta
17 chr1:173965000-173989600 Weak transcription Fetal Thymus thymus
18 chr1:173965200-173986600 Weak transcription HUVEC blood vessel
19 chr1:173966200-173986200 Weak transcription Fetal Brain Female brain
20 chr1:173966200-173989800 Weak transcription Fetal Muscle Leg muscle
21 chr1:173966400-173986600 Weak transcription Thymus Thymus
22 chr1:173966400-173987800 Weak transcription Rectal Mucosa Donor 31 rectum
23 chr1:173966400-173989600 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
24 chr1:173966400-173989800 Weak transcription Esophagus oesophagus
25 chr1:173967800-173987600 Weak transcription Brain Germinal Matrix brain
26 chr1:173968400-173983200 Weak transcription Fetal Intestine Small intestine
27 chr1:173968400-173987200 Weak transcription Fetal Intestine Large intestine
28 chr1:173969000-173983000 Weak transcription HepG2 liver
29 chr1:173971200-173988400 Weak transcription iPS-20b Cell Line embryonic stem cell
30 chr1:173974600-173986400 Weak transcription HSMM muscle
31 chr1:173975000-173983400 Weak transcription Brain Cingulate Gyrus brain
32 chr1:173975000-173983400 Weak transcription A549 lung
33 chr1:173975000-173984000 Weak transcription Colon Smooth Muscle Colon
34 chr1:173975000-173986400 Weak transcription HMEC breast
35 chr1:173975200-173986000 Weak transcription Dnd41 blood
36 chr1:173975200-173987200 Weak transcription NHLF lung
37 chr1:173975400-173987200 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
38 chr1:173975600-173986000 Weak transcription Adipose Nuclei Adipose
39 chr1:173975600-173986200 Weak transcription Breast Myoepithelial Primary Cells Breast
40 chr1:173975800-173983000 Weak transcription Duodenum Smooth Muscle Duodenum
41 chr1:173975800-173986400 Weak transcription NHDF-Ad bronchial
42 chr1:173976600-173990000 Weak transcription H9 Cell Line embryonic stem cell
43 chr1:173976800-173986400 Weak transcription Primary mononuclear cells fromperipheralblood Blood
44 chr1:173977000-173984800 Weak transcription Primary T cells fromperipheralblood blood
45 chr1:173977000-173986400 Weak transcription Fetal Stomach stomach
46 chr1:173977200-173986400 Weak transcription Cortex derived primary cultured neurospheres brain
47 chr1:173977200-173989200 Weak transcription NH-A brain
48 chr1:173977600-173983000 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
49 chr1:173977800-173983000 Weak transcription Liver Liver
50 chr1:173977800-173983000 Weak transcription Osteobl bone

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Last update: Aug 31, 2015