Variant report

Variant	rs12098685
Chromosome Location	chr10:49746900-49746901
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:49744902..49747095-chr10:49766693..49768788,2	K562	blood:
2	chr10:49744876..49747052-chr10:49752993..49755068,2	K562	blood:
3	chr10:49736745..49739219-chr10:49746347..49749288,2	MCF-7	breast:
4	chr10:49744884..49749313-chr10:49750312..49755068,6	K562	blood:
5	chr10:49732450..49736073-chr10:49745484..49747337,3	K562	blood:

Variant related genes	Relation type
ENSG00000231906	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs56828487	1.00[AMR][1000 genomes]
rs56967427	1.00[AMR][1000 genomes]
rs58163187	1.00[AMR][1000 genomes]
rs59670941	1.00[AMR][1000 genomes]
rs60857836	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895371	chr10:49492075-50232180	Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
2	nsv895372	chr10:49576878-49933488	Enhancers Weak transcription Bivalent Enhancer Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:49732200-49750800	Weak transcription	Gastric	stomach
2	chr10:49734400-49762400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr10:49735400-49749400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr10:49735400-49756800	Weak transcription	HSMMtube	muscle
5	chr10:49735600-49755600	Weak transcription	Brain Angular Gyrus	brain
6	chr10:49736200-49749400	Weak transcription	HUVEC	blood vessel
7	chr10:49739400-49762400	Weak transcription	Stomach Smooth Muscle	stomach
8	chr10:49741000-49747000	Strong transcription	Muscle Satellite Cultured Cells	--
9	chr10:49742200-49747200	Strong transcription	HSMM	muscle
10	chr10:49742600-49749000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr10:49742600-49774800	Weak transcription	Aorta	Aorta
12	chr10:49742800-49747200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr10:49742800-49755200	Weak transcription	Brain Cingulate Gyrus	brain
14	chr10:49742800-49755200	Weak transcription	Brain Hippocampus Middle	brain
15	chr10:49742800-49755600	Weak transcription	Brain Inferior Temporal Lobe	brain
16	chr10:49743800-49757800	Weak transcription	HMEC	breast
17	chr10:49745200-49748800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr10:49745400-49747200	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
19	chr10:49745400-49748600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
20	chr10:49745600-49747000	Enhancers	iPS-18 Cell Line	embryonic stem cell
21	chr10:49745600-49748600	Weak transcription	Colon Smooth Muscle	Colon
22	chr10:49746000-49748800	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
23	chr10:49746000-49749000	Weak transcription	NH-A	brain
24	chr10:49746000-49753600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
25	chr10:49746200-49749400	Weak transcription	NHLF	lung
26	chr10:49746400-49747200	Enhancers	Breast Myoepithelial Primary Cells	Breast
27	chr10:49746400-49747600	Weak transcription	H1 Cell Line	embryonic stem cell
28	chr10:49746400-49749800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
29	chr10:49746400-49749800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
30	chr10:49746400-49750200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
31	chr10:49746400-49750400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
32	chr10:49746400-49753800	Weak transcription	Brain Substantia Nigra	brain
33	chr10:49746400-49754600	Weak transcription	NHDF-Ad	bronchial
34	chr10:49746600-49748800	Weak transcription	Osteobl	bone
35	chr10:49746600-49749800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
36	chr10:49746600-49750200	Weak transcription	iPS-20b Cell Line	embryonic stem cell

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