Variant report

Variant	rs12099498
Chromosome Location	chr12:106361747-106361748
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs1421455	0.82[AFR][1000 genomes]
rs17037924	0.86[AFR][1000 genomes]
rs61179844	0.86[AFR][1000 genomes]
rs7299534	0.86[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832508	chr12:106198797-106409112	Weak transcription Enhancers Active TSS Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:106356000-106376000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr12:106356600-106364000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr12:106356800-106363200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr12:106359200-106363800	Enhancers	Fetal Heart	heart
5	chr12:106359800-106362000	Enhancers	Skeletal Muscle Male	skeletal muscle
6	chr12:106360000-106361800	Enhancers	Skeletal Muscle Female	skeletal muscle
7	chr12:106360400-106362000	Enhancers	HSMM	muscle
8	chr12:106360400-106362200	Enhancers	HSMMtube	muscle
9	chr12:106360600-106361800	Enhancers	HUVEC	blood vessel
10	chr12:106360800-106361800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr12:106360800-106361800	Enhancers	NH-A	brain
12	chr12:106360800-106362200	Enhancers	Rectal Smooth Muscle	rectum
13	chr12:106361000-106361800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr12:106361000-106361800	Enhancers	Colon Smooth Muscle	Colon
15	chr12:106361000-106362000	Enhancers	Stomach Smooth Muscle	stomach
16	chr12:106361000-106367000	Weak transcription	Right Atrium	heart
17	chr12:106361600-106362000	Enhancers	Duodenum Smooth Muscle	Duodenum

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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