Variant report

Variant	rs12099612
Chromosome Location	chr12:116951301-116951302
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs12099899	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12306150	1.00[AMR][1000 genomes]
rs2733639	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv899540	chr12:116920503-116999861	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:116946600-116970400	Weak transcription	Esophagus	oesophagus
2	chr12:116946800-116959200	Weak transcription	Right Atrium	heart
3	chr12:116947000-116952400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr12:116947000-116954600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr12:116947000-116956400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr12:116947000-116956400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr12:116947600-116955000	Weak transcription	Fetal Thymus	thymus
8	chr12:116951000-116954600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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