Variant report

Variant	rs12099637
Chromosome Location	chr12:47344286-47344287
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs11183659	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12312374	1.00[ASN][1000 genomes]
rs2715771	0.97[ASN][1000 genomes]
rs4768766	1.00[ASN][1000 genomes]
rs7305185	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7309705	1.00[JPT][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73286069	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73286093	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs74082948	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1845143	chr12:47051076-47431496	Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats Active TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:47337000-47350400	Weak transcription	Psoas Muscle	Psoas
2	chr12:47338800-47349800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr12:47342400-47347600	Enhancers	Hela-S3	cervix
4	chr12:47342800-47346200	Weak transcription	Muscle Satellite Cultured Cells	--
5	chr12:47343200-47344600	Weak transcription	Placenta Amnion	Placenta Amnion
6	chr12:47343200-47352800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr12:47343600-47344800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr12:47343800-47344600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr12:47343800-47344800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr12:47343800-47344800	Enhancers	HMEC	breast
11	chr12:47343800-47344800	Enhancers	NHEK	skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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