Variant report

Variant	rs12101574
Chromosome Location	chr15:72092506-72092507
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs11072329	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11072330	0.86[ASN][1000 genomes]
rs11072331	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1109744	0.88[JPT][hapmap]
rs12442824	0.95[ASN][1000 genomes]
rs2723340	0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4776576	1.00[CEU][hapmap];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6494968	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6494969	0.95[ASN][1000 genomes]
rs7164847	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7174353	0.83[ASN][1000 genomes]
rs7495064	0.89[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv904334	chr15:71737376-72177659	Strong transcription Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv1036938	chr15:71948106-72272855	Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Enhancers Genic enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
3	esv3331306	chr15:72049818-72427559	Strong transcription ZNF genes & repeats Active TSS Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
4	esv3433206	chr15:72049838-72427529	Enhancers Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:72072000-72093200	Weak transcription	Fetal Stomach	stomach
2	chr15:72076000-72099000	Weak transcription	Right Atrium	heart
3	chr15:72084800-72097000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr15:72084800-72098800	Weak transcription	Pancreas	Pancrea
5	chr15:72085200-72093200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr15:72085400-72098600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr15:72090000-72093200	Weak transcription	Fetal Muscle Leg	muscle
8	chr15:72091400-72096600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr15:72091400-72098600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr15:72091600-72092600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr15:72091600-72096600	Weak transcription	HMEC	breast
12	chr15:72092400-72092600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr15:72092400-72092600	Enhancers	A549	lung
14	chr15:72092400-72093600	Enhancers	Rectal Mucosa Donor 31	rectum
15	chr15:72092400-72094000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr15:72092400-72094000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
17	chr15:72092400-72094200	Enhancers	Hela-S3	cervix

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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