Variant report

Variant	rs12102176
Chromosome Location	chr15:32971435-32971436
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs12438604	0.80[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12441140	0.98[ASN][1000 genomes]
rs28688414	0.85[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs7177176	0.82[AMR][1000 genomes]
rs7177843	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv431374	chr15:32008985-32976055	Weak transcription Active TSS Enhancers Flanking Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
2	esv2422296	chr15:32798938-33221215	Weak transcription Enhancers Strong transcription Genic enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
3	nsv469587	chr15:32821940-32986579	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
4	nsv482780	chr15:32821940-32986579	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
5	nsv456785	chr15:32926076-33352989	Genic enhancers Active TSS Weak transcription Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
6	nsv568913	chr15:32926076-33352989	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
7	nsv482680	chr15:32958401-33154005	Bivalent Enhancer Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Genic enhancers Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
8	nsv568915	chr15:32965357-32994056	Weak transcription Enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
9	nsv456787	chr15:32968923-33023951	Enhancers Bivalent Enhancer Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
10	nsv568916	chr15:32968923-33023951	Weak transcription Flanking Active TSS Bivalent Enhancer Enhancers Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:45 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:32952200-32972800	Weak transcription	Fetal Brain Female	brain
2	chr15:32956200-32973800	Weak transcription	HSMM	muscle
3	chr15:32961200-32976200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr15:32961200-32980200	Weak transcription	Thymus	Thymus
5	chr15:32963000-32974200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr15:32964600-32990800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr15:32964800-32993800	Weak transcription	Fetal Brain Male	brain
8	chr15:32965000-32974000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
9	chr15:32965000-32983600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
10	chr15:32968800-32972800	Weak transcription	Brain Germinal Matrix	brain
11	chr15:32968800-32974000	Weak transcription	NHEK	skin
12	chr15:32968800-32974200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr15:32968800-32974200	Weak transcription	Duodenum Smooth Muscle	Duodenum
14	chr15:32969400-32972000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr15:32969800-32971800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
16	chr15:32969800-32974000	Weak transcription	Brain Angular Gyrus	brain
17	chr15:32970000-32974000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr15:32970000-32974000	Weak transcription	Muscle Satellite Cultured Cells	--
19	chr15:32970000-32974000	Weak transcription	Osteobl	bone
20	chr15:32970000-32974400	Weak transcription	Brain Anterior Caudate	brain
21	chr15:32970000-32974400	Weak transcription	Brain Hippocampus Middle	brain
22	chr15:32970000-32974400	Weak transcription	Stomach Smooth Muscle	stomach
23	chr15:32970000-32974400	Weak transcription	Hela-S3	cervix
24	chr15:32970000-32977800	Weak transcription	H9 Cell Line	embryonic stem cell
25	chr15:32970000-32982600	Weak transcription	H1 Cell Line	embryonic stem cell
26	chr15:32970200-32972000	Enhancers	HepG2	liver
27	chr15:32970200-32973800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
28	chr15:32970200-32974000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
29	chr15:32970200-32974000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
30	chr15:32970200-32974000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
31	chr15:32970200-32974000	Weak transcription	NH-A	brain
32	chr15:32970200-32974400	Weak transcription	Brain Cingulate Gyrus	brain
33	chr15:32970200-32974400	Weak transcription	Brain Substantia Nigra	brain
34	chr15:32970200-32974600	Weak transcription	Brain Inferior Temporal Lobe	brain
35	chr15:32970200-32976200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
36	chr15:32970200-32977800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
37	chr15:32970200-32979400	Weak transcription	HUES64 Cell Line	embryonic stem cell
38	chr15:32970200-32979600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
39	chr15:32970600-32972200	Enhancers	A549	lung
40	chr15:32970800-32972000	Enhancers	NHDF-Ad	bronchial
41	chr15:32971000-32971800	Weak transcription	Pancreatic Islets	Pancreatic Islet
42	chr15:32971200-32972000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
43	chr15:32971200-32972200	Flanking Active TSS	Liver	Liver
44	chr15:32971200-32972600	Enhancers	Fetal Muscle Trunk	muscle
45	chr15:32971200-32974200	Weak transcription	Adipose Nuclei	Adipose

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