Variant report

Variant	rs12103773
Chromosome Location	chr17:46798188-46798189
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs12150590	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12150596	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs16943295	0.85[CHB][hapmap];0.82[JPT][hapmap];0.82[ASN][1000 genomes]
rs1879109	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1879110	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2411796	0.86[CHB][hapmap]
rs2411802	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3809773	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4239159	0.85[ASN][1000 genomes]
rs4793973	0.86[CHB][hapmap]
rs6504508	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7211412	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7215226	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7215321	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9907753	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9908166	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3420538	chr17:46504944-46861553	Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Enhancers Transcr. at gene 5' and 3' Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	369 gene(s)	inside rSNPs	diseases
2	nsv532113	chr17:46598247-47588570	Genic enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Enhancers Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	453 gene(s)	inside rSNPs	diseases
3	esv2758459	chr17:46602673-46836837	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	364 gene(s)	inside rSNPs	diseases
4	esv2758694	chr17:46602673-46836837	Active TSS Bivalent Enhancer Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	364 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:46793800-46798200	Weak transcription	A549	lung
2	chr17:46794800-46798200	Bivalent/Poised TSS	Rectal Mucosa Donor 31	rectum
3	chr17:46795000-46801000	Bivalent/Poised TSS	Rectal Mucosa Donor 29	rectum
4	chr17:46795600-46802000	Bivalent/Poised TSS	Rectal Smooth Muscle	rectum
5	chr17:46796800-46798400	Bivalent Enhancer	ES-UCSF4 Cell Line	embryonic stem cell
6	chr17:46797000-46800800	Weak transcription	Right Atrium	heart
7	chr17:46797200-46798600	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
8	chr17:46797400-46798200	Bivalent Enhancer	H9 Cell Line	embryonic stem cell
9	chr17:46797400-46798200	Flanking Bivalent TSS/Enh	HUES6 Cell Line	embryonic stem cell
10	chr17:46797400-46798200	Flanking Bivalent TSS/Enh	iPS-15b Cell Line	embryonic stem cell
11	chr17:46797400-46798200	Bivalent Enhancer	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr17:46797600-46798200	Bivalent Enhancer	HUES64 Cell Line	embryonic stem cell
13	chr17:46797600-46798400	Bivalent Enhancer	iPS-20b Cell Line	embryonic stem cell
14	chr17:46797600-46798600	Bivalent Enhancer	iPS DF 19.11 Cell Line	embryonic stem cell
15	chr17:46797800-46798200	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr17:46797800-46798400	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
17	chr17:46797800-46798600	Bivalent Enhancer	ES-WA7 Cell Line	embryonic stem cell
18	chr17:46797800-46798600	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell
19	chr17:46798000-46798400	Bivalent Enhancer	ES-I3 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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