Variant report

Variant	rs12105647
Chromosome Location	chr2:173908241-173908242
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr2:173903027..173904652-chr2:173908089..173910075,2	MCF-7	breast:
2	chr2:173885808..173888407-chr2:173907815..173910951,3	MCF-7	breast:
3	chr2:173907898..173920360-chr2:173936226..173946823,30	MCF-7	breast:
4	chr13:29291574..29294456-chr2:173907850..173910644,2	MCF-7	breast:
5	chr2:173895149..173898676-chr2:173907706..173911844,6	MCF-7	breast:
6	chr2:173905270..173911343-chr2:173911871..173916630,12	MCF-7	breast:
7	chr2:173907933..173910689-chr2:173917476..173919133,2	K562	blood:
8	chr2:173848593..173850248-chr2:173906462..173908471,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000091428	Chromatin interaction
ENSG00000091436	Chromatin interaction
ENSG00000139508	Chromatin interaction

Extended variants
information (count: 2 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs2676499	1.00[CHD][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834459	chr2:173735192-173926750	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:173881200-173912800	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr2:173893000-173908800	Weak transcription	Brain Inferior Temporal Lobe	brain
3	chr2:173893000-173913200	Weak transcription	Brain Cingulate Gyrus	brain
4	chr2:173893200-173922000	Weak transcription	Brain Anterior Caudate	brain
5	chr2:173894000-173909200	Weak transcription	Fetal Stomach	stomach
6	chr2:173901000-173918000	Weak transcription	Brain Angular Gyrus	brain
7	chr2:173902400-173908600	Weak transcription	Fetal Intestine Large	intestine
8	chr2:173902400-173909600	Weak transcription	Small Intestine	intestine
9	chr2:173902800-173908400	Weak transcription	Fetal Muscle Trunk	muscle
10	chr2:173902800-173909800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr2:173904400-173921400	Weak transcription	Ovary	ovary
12	chr2:173904600-173913000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
13	chr2:173906000-173909200	Weak transcription	H9 Cell Line	embryonic stem cell
14	chr2:173906400-173910200	Enhancers	Breast Myoepithelial Primary Cells	Breast
15	chr2:173906800-173908600	Weak transcription	Lung	lung
16	chr2:173906800-173908800	Strong transcription	Cortex derived primary cultured neurospheres	brain
17	chr2:173906800-173912800	Weak transcription	Skeletal Muscle Female	skeletal muscle
18	chr2:173906800-173913000	Weak transcription	Skeletal Muscle Male	skeletal muscle
19	chr2:173907400-173909400	Enhancers	Primary monocytes fromperipheralblood	blood
20	chr2:173907600-173910400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
21	chr2:173907800-173909200	Weak transcription	Colon Smooth Muscle	Colon
22	chr2:173907800-173910400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
23	chr2:173908000-173908400	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
24	chr2:173908000-173908800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
25	chr2:173908000-173908800	Enhancers	Liver	Liver
26	chr2:173908000-173910600	Enhancers	Rectal Smooth Muscle	rectum
27	chr2:173908200-173908400	Enhancers	Right Ventricle	heart
28	chr2:173908200-173908600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
29	chr2:173908200-173908600	Enhancers	Left Ventricle	heart
30	chr2:173908200-173908800	Enhancers	Fetal Heart	heart
31	chr2:173908200-173910000	Enhancers	HMEC	breast

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links