Variant report

Variant	rs12105820
Chromosome Location	chr2:31125055-31125056
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs12105915	1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833659	chr2:31020572-31171505	Weak transcription Enhancers Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv948552	chr2:31118599-31595424	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:31120000-31133600	Weak transcription	Primary B cells from cord blood	blood
2	chr2:31120400-31126000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr2:31121600-31126200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr2:31121600-31133200	Weak transcription	Primary hematopoietic stem cells	blood
5	chr2:31121800-31127400	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr2:31122200-31143800	Weak transcription	Esophagus	oesophagus
7	chr2:31122800-31125800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr2:31122800-31191400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr2:31124400-31133600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr2:31124600-31125400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
11	chr2:31124600-31146800	Weak transcription	NHEK	skin
12	chr2:31125000-31126200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
13	chr2:31125000-31127200	Strong transcription	Primary neutrophils fromperipheralblood	blood
14	chr2:31125000-31133200	Weak transcription	A549	lung

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links