The 2.0 version of rSNPBase

Variant report

Variant rs12106780
Chromosome Location chr3:59757268-59757269
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:43 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr3:59741600-59757800 Weak transcription Sigmoid Colon Sigmoid Colon
2 chr3:59746800-59757400 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
3 chr3:59750200-59757600 Weak transcription Esophagus oesophagus
4 chr3:59755600-59761400 Enhancers Fetal Thymus thymus
5 chr3:59756000-59758000 Weak transcription GM12878-XiMat blood
6 chr3:59756200-59760400 Enhancers Primary hematopoietic stem cells blood
7 chr3:59756400-59758000 Enhancers Primary hematopoietic stem cells short term culture blood
8 chr3:59756400-59761200 Enhancers Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
9 chr3:59756600-59757800 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
10 chr3:59756600-59757800 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
11 chr3:59756600-59758200 Enhancers Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
12 chr3:59756600-59758200 Enhancers NHDF-Ad bronchial
13 chr3:59756600-59758800 Enhancers Osteobl bone
14 chr3:59756600-59759400 Weak transcription Fetal Muscle Leg muscle
15 chr3:59756600-59761200 Enhancers Muscle Satellite Cultured Cells --
16 chr3:59756800-59758200 Enhancers Primary hematopoietic stem cells G-CSF-mobilized Male --
17 chr3:59756800-59758600 Enhancers Primary T helper cells fromperipheralblood blood
18 chr3:59756800-59758800 Enhancers Primary T killer naive cells fromperipheralblood blood
19 chr3:59756800-59758800 Enhancers HMEC breast
20 chr3:59756800-59763600 Enhancers Primary Natural Killer cells fromperipheralblood blood
21 chr3:59757000-59757800 Enhancers Thymus Thymus
22 chr3:59757000-59758000 Weak transcription Breast Myoepithelial Primary Cells Breast
23 chr3:59757000-59758000 Enhancers Foreskin Keratinocyte Primary Cells skin02 Skin
24 chr3:59757000-59758000 Enhancers Dnd41 blood
25 chr3:59757000-59758200 Enhancers Primary T cells from cord blood blood
26 chr3:59757000-59758400 Enhancers Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
27 chr3:59757000-59758400 Enhancers Primary T helper naive cells from peripheral blood blood
28 chr3:59757000-59758400 Enhancers Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
29 chr3:59757000-59758600 Enhancers Placenta Amnion Placenta Amnion
30 chr3:59757000-59759600 Enhancers Primary hematopoietic stem cells G-CSF-mobilized Female --
31 chr3:59757200-59757600 Enhancers NHLF lung
32 chr3:59757200-59758000 Enhancers Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
33 chr3:59757200-59758000 Enhancers HSMMtube muscle
34 chr3:59757200-59758000 Enhancers NHEK skin
35 chr3:59757200-59758400 Enhancers Primary T helper naive cells fromperipheralblood blood
36 chr3:59757200-59758400 Enhancers Foreskin Fibroblast Primary Cells skin02 Skin
37 chr3:59757200-59758400 Enhancers A549 lung
38 chr3:59757200-59758600 Enhancers Foreskin Fibroblast Primary Cells skin01 Skin
39 chr3:59757200-59758800 Enhancers Primary T killer memory cells from peripheral blood blood
40 chr3:59757200-59759000 Enhancers NH-A brain
41 chr3:59757200-59760000 Enhancers Primary T helper memory cells from peripheral blood 1 blood
42 chr3:59757200-59760200 Enhancers Primary T cells fromperipheralblood blood
43 chr3:59757200-59761200 Enhancers IMR90 fetal lung fibroblasts Cell Line lung

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Last update: Aug 31, 2015