The 2.0 version of rSNPBase

Variant report

Variant rs12108729
Chromosome Location chr5:58389813-58389814
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:38 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr5:58376400-58390400 Weak transcription Hela-S3 cervix
2 chr5:58378200-58391800 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
3 chr5:58386400-58390200 Weak transcription Fetal Brain Male brain
4 chr5:58386400-58391000 Weak transcription Pancreatic Islets Pancreatic Islet
5 chr5:58387800-58394600 Weak transcription Sigmoid Colon Sigmoid Colon
6 chr5:58388600-58394600 Weak transcription Stomach Mucosa stomach
7 chr5:58388800-58391400 Weak transcription Skeletal Muscle Female skeletal muscle
8 chr5:58389000-58390000 Enhancers Primary T cells from cord blood blood
9 chr5:58389000-58394600 Weak transcription HSMM muscle
10 chr5:58389200-58390200 Weak transcription Placenta Amnion Placenta Amnion
11 chr5:58389200-58390800 Weak transcription Fetal Intestine Large intestine
12 chr5:58389200-58390800 Weak transcription Fetal Intestine Small intestine
13 chr5:58389200-58391600 Enhancers Fetal Lung lung
14 chr5:58389200-58394600 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
15 chr5:58389400-58391200 Weak transcription Fetal Heart heart
16 chr5:58389400-58392800 Weak transcription NHLF lung
17 chr5:58389400-58394200 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
18 chr5:58389600-58390600 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
19 chr5:58389600-58390600 Weak transcription Osteobl bone
20 chr5:58389600-58390800 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
21 chr5:58389600-58391200 Weak transcription Duodenum Mucosa Duodenum
22 chr5:58389600-58391400 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
23 chr5:58389600-58391400 Weak transcription Duodenum Smooth Muscle Duodenum
24 chr5:58389600-58391600 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
25 chr5:58389600-58391600 Weak transcription Stomach Smooth Muscle stomach
26 chr5:58389600-58391800 Weak transcription Small Intestine intestine
27 chr5:58389600-58392000 Weak transcription Fetal Stomach stomach
28 chr5:58389600-58393000 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
29 chr5:58389600-58394000 Weak transcription Primary T helper cells PMA-I stimulated --
30 chr5:58389600-58394200 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
31 chr5:58389600-58394600 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
32 chr5:58389800-58390200 Enhancers A549 lung
33 chr5:58389800-58390400 Weak transcription Colon Smooth Muscle Colon
34 chr5:58389800-58390800 Weak transcription Rectal Smooth Muscle rectum
35 chr5:58389800-58394000 Weak transcription Primary T helper 17 cells PMA-I stimulated --
36 chr5:58389800-58394200 Weak transcription NHEK skin
37 chr5:58389800-58394800 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
38 chr5:58389800-58395000 Weak transcription HepG2 liver

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Last update: Aug 31, 2015