Variant report

Variant	rs12114802
Chromosome Location	chr8:64193072-64193073
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs11785601	0.83[CHD][hapmap];1.00[JPT][hapmap]
rs12114246	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61331345	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831342	chr8:64084331-64294941	Enhancers Flanking Active TSS Weak transcription Genic enhancers Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv890967	chr8:64107847-64454446	Weak transcription Active TSS Enhancers Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:64192600-64193200	Enhancers	iPS-20b Cell Line	embryonic stem cell
2	chr8:64192800-64193200	Enhancers	H9 Cell Line	embryonic stem cell
3	chr8:64192800-64193200	Enhancers	HUES48 Cell Line	embryonic stem cell
4	chr8:64192800-64193200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr8:64192800-64193400	Enhancers	ES-WA7 Cell Line	embryonic stem cell
6	chr8:64192800-64193400	Enhancers	HUES6 Cell Line	embryonic stem cell
7	chr8:64193000-64193200	Enhancers	ES-I3 Cell Line	embryonic stem cell
8	chr8:64193000-64193400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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