Variant report

Variant	rs12114851
Chromosome Location	chr8:89332979-89332980
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr3:38038103..38039026-chr8:89332890..89333545,2	MCF-7	breast:
2	chr8:88843768..88844920-chr8:89332543..89333442,5	MCF-7	breast:
3	chr8:89332241..89335176-chr8:89338649..89342279,4	MCF-7	breast:
4	chr8:87883360..87883942-chr8:89332516..89333479,3	MCF-7	breast:
5	chr8:88707297..88708095-chr8:89332541..89333126,2	MCF-7	breast:
6	chr8:88707259..88707936-chr8:89332525..89333061,2	MCF-7	breast:
7	chr8:89332758..89333407-chr8:89566429..89566999,2	MCF-7	breast:
8	chr12:83078753..83081340-chr8:89332269..89334018,2	MCF-7	breast:
9	chr8:89215614..89216190-chr8:89332907..89333555,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000156103	Chromatin interaction
ENSG00000179104	Chromatin interaction
ENSG00000253553	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs28907895	0.87[AFR][1000 genomes]
rs58905135	0.81[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029898	chr8:88837956-89606641	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv1030028	chr8:89060085-89733470	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv1019111	chr8:89186908-89475460	Weak transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv831386	chr8:89209788-89403546	Enhancers Genic enhancers Active TSS Bivalent Enhancer Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:89320800-89337600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr8:89321800-89333400	Weak transcription	Fetal Brain Male	brain
3	chr8:89324400-89336200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr8:89326600-89338200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr8:89327200-89336200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr8:89327400-89336000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr8:89327400-89336000	Weak transcription	Cortex derived primary cultured neurospheres	brain
8	chr8:89330600-89333200	Enhancers	Fetal Heart	heart
9	chr8:89331000-89333400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr8:89331200-89333200	Enhancers	NH-A	brain
11	chr8:89331200-89333200	Enhancers	Osteobl	bone
12	chr8:89331800-89333200	Enhancers	HUES64 Cell Line	embryonic stem cell
13	chr8:89332000-89333400	Enhancers	iPS-15b Cell Line	embryonic stem cell
14	chr8:89332000-89335000	Weak transcription	Aorta	Aorta
15	chr8:89332200-89333000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
16	chr8:89332200-89333400	Enhancers	iPS-18 Cell Line	embryonic stem cell
17	chr8:89332400-89336000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr8:89332600-89333000	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
19	chr8:89332600-89333200	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
20	chr8:89332600-89333200	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
21	chr8:89332600-89333200	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
22	chr8:89332600-89333200	Enhancers	Brain Anterior Caudate	brain
23	chr8:89332600-89333200	Enhancers	NHDF-Ad	bronchial
24	chr8:89332600-89334200	Enhancers	Pancreatic Islets	Pancreatic Islet
25	chr8:89332800-89333000	Flanking Active TSS	ES-I3 Cell Line	embryonic stem cell
26	chr8:89332800-89333000	Enhancers	Brain Angular Gyrus	brain
27	chr8:89332800-89333200	Enhancers	H9 Cell Line	embryonic stem cell
28	chr8:89332800-89333200	Enhancers	Brain Germinal Matrix	brain
29	chr8:89332800-89333200	Enhancers	Colon Smooth Muscle	Colon
30	chr8:89332800-89333200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
31	chr8:89332800-89333200	Flanking Active TSS	Fetal Brain Female	brain
32	chr8:89332800-89333200	Enhancers	Fetal Kidney	kidney
33	chr8:89332800-89333200	Enhancers	Rectal Smooth Muscle	rectum
34	chr8:89332800-89333200	Enhancers	HUVEC	blood vessel
35	chr8:89332800-89336200	Weak transcription	H1 Cell Line	embryonic stem cell

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