Variant report

Variant	rs12115272
Chromosome Location	chr9:108133247-108133248
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:108124822..108127933-chr9:108132017..108134314,3	MCF-7	breast:

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs11506819	0.81[YRI][hapmap]
rs12339205	1.00[AFR][1000 genomes]
rs12348983	0.82[YRI][hapmap]
rs16924487	0.82[YRI][hapmap]
rs16924552	0.82[YRI][hapmap];0.93[AMR][1000 genomes]
rs2417642	0.93[AMR][1000 genomes]
rs28409512	0.93[AMR][1000 genomes]
rs6479317	0.93[AMR][1000 genomes]
rs7034136	0.84[YRI][hapmap]
rs7040751	0.82[YRI][hapmap]
rs7048586	0.81[YRI][hapmap]
rs7860321	0.82[YRI][hapmap]
rs9299385	0.86[YRI][hapmap]
rs9299386	0.81[YRI][hapmap]
rs9299387	0.82[YRI][hapmap]
rs9632901	0.82[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045108	chr9:107509553-108188550	Weak transcription Flanking Active TSS Strong transcription Enhancers Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
2	nsv1037750	chr9:108027692-108251733	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:108 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:108055600-108151200	Weak transcription	Esophagus	oesophagus
2	chr9:108091600-108150400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr9:108092000-108148000	Weak transcription	Psoas Muscle	Psoas
4	chr9:108093200-108149800	Weak transcription	HUVEC	blood vessel
5	chr9:108096200-108164200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr9:108097400-108133600	Weak transcription	Placenta	Placenta
7	chr9:108097600-108147000	Weak transcription	HMEC	breast
8	chr9:108100200-108136200	Weak transcription	Fetal Muscle Leg	muscle
9	chr9:108100200-108149600	Weak transcription	Pancreas	Pancrea
10	chr9:108104800-108147600	Weak transcription	Rectal Smooth Muscle	rectum
11	chr9:108105000-108133400	Weak transcription	Fetal Thymus	thymus
12	chr9:108105000-108149600	Weak transcription	Right Ventricle	heart
13	chr9:108105000-108151200	Weak transcription	Gastric	stomach
14	chr9:108105000-108154800	Weak transcription	Small Intestine	intestine
15	chr9:108105200-108149800	Weak transcription	NHDF-Ad	bronchial
16	chr9:108117000-108146400	Strong transcription	Monocytes-CD14+_RO01746	blood
17	chr9:108117400-108147400	Weak transcription	Spleen	Spleen
18	chr9:108118200-108147200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
19	chr9:108118400-108134400	Strong transcription	Primary monocytes fromperipheralblood	blood
20	chr9:108118400-108134400	Strong transcription	Liver	Liver
21	chr9:108118400-108139800	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr9:108118600-108147600	Weak transcription	Primary B cells from peripheral blood	blood
23	chr9:108120200-108133600	Strong transcription	iPS-20b Cell Line	embryonic stem cell
24	chr9:108120200-108146200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr9:108121400-108139400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
26	chr9:108121600-108157000	Weak transcription	H9 Cell Line	embryonic stem cell
27	chr9:108121800-108137000	Weak transcription	Primary T helper cells fromperipheralblood	blood
28	chr9:108121800-108137000	Weak transcription	Colon Smooth Muscle	Colon
29	chr9:108121800-108148600	Weak transcription	A549	lung
30	chr9:108122000-108137400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
31	chr9:108122200-108133800	Strong transcription	Rectal Mucosa Donor 31	rectum
32	chr9:108122200-108134400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
33	chr9:108122400-108148200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
34	chr9:108122600-108137400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
35	chr9:108122600-108137400	Weak transcription	Fetal Muscle Trunk	muscle
36	chr9:108122600-108153400	Weak transcription	Stomach Mucosa	stomach
37	chr9:108123000-108134800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
38	chr9:108123600-108133600	Weak transcription	Thymus	Thymus
39	chr9:108123600-108154400	Weak transcription	Colonic Mucosa	Colon
40	chr9:108123800-108136800	Weak transcription	HSMM	muscle
41	chr9:108123800-108147600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
42	chr9:108124000-108134000	Weak transcription	Fetal Kidney	kidney
43	chr9:108124200-108137400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
44	chr9:108124200-108147000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
45	chr9:108124200-108147600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
46	chr9:108124400-108137000	Weak transcription	Fetal Brain Female	brain
47	chr9:108124400-108137200	Weak transcription	Lung	lung
48	chr9:108124400-108137400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
49	chr9:108124400-108147400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
50	chr9:108124400-108151000	Weak transcription	Fetal Brain Male	brain

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