Variant report

Variant rs12116571
Chromosome Location chr1:197088993-197088994
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:68 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:197052200-197106600 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
2 chr1:197052200-197114200 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
3 chr1:197054200-197113600 Weak transcription Fetal Kidney kidney
4 chr1:197055000-197114200 Weak transcription Primary B cells from cord blood blood
5 chr1:197067000-197092200 Weak transcription Fetal Intestine Large intestine
6 chr1:197070600-197100000 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
7 chr1:197071000-197105400 Strong transcription Dnd41 blood
8 chr1:197071400-197095800 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
9 chr1:197071800-197104600 Weak transcription Rectal Mucosa Donor 31 rectum
10 chr1:197072600-197104600 Strong transcription Monocytes-CD14+_RO01746 blood
11 chr1:197072600-197107400 Weak transcription Fetal Intestine Small intestine
12 chr1:197073000-197104000 Strong transcription Primary monocytes fromperipheralblood blood
13 chr1:197073000-197115000 Weak transcription Sigmoid Colon Sigmoid Colon
14 chr1:197073600-197098400 Weak transcription ES-I3 Cell Line embryonic stem cell
15 chr1:197073800-197091400 Weak transcription H9 Cell Line embryonic stem cell
16 chr1:197074000-197115000 Weak transcription Fetal Brain Male brain
17 chr1:197074200-197091400 Weak transcription NHEK skin
18 chr1:197074200-197102000 Weak transcription ES-WA7 Cell Line embryonic stem cell
19 chr1:197076200-197094000 Weak transcription Muscle Satellite Cultured Cells --
20 chr1:197076400-197096400 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
21 chr1:197077000-197114200 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
22 chr1:197077200-197090800 Weak transcription NHLF lung
23 chr1:197078200-197100400 Weak transcription Rectal Mucosa Donor 29 rectum
24 chr1:197080400-197092600 Strong transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
25 chr1:197080600-197105400 Strong transcription Fetal Thymus thymus
26 chr1:197081200-197103000 Strong transcription Primary hematopoietic stem cells short term culture blood
27 chr1:197081800-197090200 Strong transcription Primary hematopoietic stem cells blood
28 chr1:197082000-197094600 Strong transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
29 chr1:197083000-197089200 Strong transcription iPS-18 Cell Line embryonic stem cell
30 chr1:197083600-197098200 Strong transcription HUES48 Cell Line embryonic stem cell
31 chr1:197083600-197108000 Strong transcription HUVEC blood vessel
32 chr1:197083800-197095200 Strong transcription ES-UCSF4 Cell Line embryonic stem cell
33 chr1:197084000-197099000 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
34 chr1:197084200-197094200 Strong transcription H1 Cell Line embryonic stem cell
35 chr1:197084200-197098400 Strong transcription HUES64 Cell Line embryonic stem cell
36 chr1:197084200-197098600 Strong transcription iPS-20b Cell Line embryonic stem cell
37 chr1:197084400-197102000 Weak transcription Duodenum Mucosa Duodenum
38 chr1:197084400-197106600 Weak transcription Fetal Stomach stomach
39 chr1:197084600-197100000 Strong transcription Hela-S3 cervix
40 chr1:197085000-197091600 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
41 chr1:197085000-197095800 Strong transcription A549 lung
42 chr1:197085400-197092600 Strong transcription K562 blood
43 chr1:197085800-197090600 Weak transcription Fetal Muscle Trunk muscle
44 chr1:197085800-197090800 Weak transcription Cortex derived primary cultured neurospheres brain
45 chr1:197085800-197091600 Weak transcription Fetal Muscle Leg muscle
46 chr1:197085800-197099800 Weak transcription Fetal Heart heart
47 chr1:197085800-197099800 Weak transcription Thymus Thymus
48 chr1:197085800-197109600 Weak transcription Brain Germinal Matrix brain
49 chr1:197085800-197111000 Strong transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
50 chr1:197086200-197091000 Weak transcription HMEC breast

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