Variant report

Variant	rs12116748
Chromosome Location	chr1:212095163-212095164
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:212092565..212095366-chr1:212097974..212099950,2	MCF-7	breast:
2	chr1:212002514..212004215-chr1:212094353..212097202,2	K562	blood:

Variant related genes	Relation type
ENSG00000229258	Chromatin interaction
ENSG00000123684	Chromatin interaction

rs_ID	r²[population]
rs11119845	0.83[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs12117000	0.83[EUR][1000 genomes]
rs12122562	0.83[EUR][1000 genomes]
rs12123274	0.83[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs17699316	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:212084800-212113000	Weak transcription	Brain Anterior Caudate	brain
2	chr1:212085400-212101800	Weak transcription	Colonic Mucosa	Colon
3	chr1:212088000-212099200	Enhancers	Fetal Intestine Large	intestine
4	chr1:212088600-212099200	Enhancers	Fetal Intestine Small	intestine
5	chr1:212090800-212095400	Enhancers	Adipose Nuclei	Adipose
6	chr1:212091000-212102200	Weak transcription	Esophagus	oesophagus
7	chr1:212092000-212096400	Weak transcription	Pancreatic Islets	Pancreatic Islet
8	chr1:212092000-212096600	Weak transcription	HMEC	breast
9	chr1:212093000-212098400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
10	chr1:212093600-212095400	Enhancers	Liver	Liver
11	chr1:212093800-212098200	Weak transcription	Rectal Mucosa Donor 31	rectum
12	chr1:212093800-212101800	Weak transcription	Gastric	stomach
13	chr1:212094000-212095400	Enhancers	Right Atrium	heart
14	chr1:212094200-212103200	Weak transcription	Small Intestine	intestine
15	chr1:212094400-212095600	Enhancers	A549	lung
16	chr1:212094400-212096200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
17	chr1:212094400-212098000	Weak transcription	Fetal Muscle Leg	muscle
18	chr1:212094400-212098200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr1:212094400-212101400	Weak transcription	Stomach Mucosa	stomach
20	chr1:212094400-212102200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr1:212094600-212096200	Enhancers	HepG2	liver
22	chr1:212094600-212098400	Weak transcription	Hela-S3	cervix

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