Variant report

Variant	rs12117551
Chromosome Location	chr1:211959053-211959054
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:211956372..211959322-chr1:211961904..211964025,2	K562	blood:
2	chr1:211957822..211959614-chr1:211962525..211964186,2	K562	blood:

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs1044788	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10494942	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12118567	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12121056	0.90[ASN][1000 genomes]
rs12127709	0.81[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs12129884	0.81[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs12129898	0.88[AFR][1000 genomes];0.84[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs12134985	0.81[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs12140530	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12143191	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12144899	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3292	0.81[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs61828461	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61828464	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61828466	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61828469	0.87[ASN][1000 genomes]
rs61831161	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61831162	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:113 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:211912600-211964600	Weak transcription	NHEK	skin
2	chr1:211912800-211970200	Weak transcription	HMEC	breast
3	chr1:211913800-211967800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
4	chr1:211913800-211968800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
5	chr1:211913800-211969600	Weak transcription	Small Intestine	intestine
6	chr1:211914000-211960400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
7	chr1:211914000-211965400	Weak transcription	Thymus	Thymus
8	chr1:211914000-211973600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
9	chr1:211915800-211991800	Weak transcription	Muscle Satellite Cultured Cells	--
10	chr1:211916200-211965400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr1:211916800-211994200	Weak transcription	Fetal Brain Male	brain
12	chr1:211917000-211970400	Strong transcription	Monocytes-CD14+_RO01746	blood
13	chr1:211919200-212001200	Weak transcription	Gastric	stomach
14	chr1:211922600-211965600	Weak transcription	Osteobl	bone
15	chr1:211922800-211963000	Weak transcription	Hela-S3	cervix
16	chr1:211922800-211964800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr1:211922800-211965400	Weak transcription	Right Ventricle	heart
18	chr1:211923000-211967200	Weak transcription	Colonic Mucosa	Colon
19	chr1:211923000-211991800	Weak transcription	HSMM	muscle
20	chr1:211923200-211963400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
21	chr1:211923200-211967200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
22	chr1:211923800-211960600	Weak transcription	Psoas Muscle	Psoas
23	chr1:211924000-212002400	Weak transcription	NHLF	lung
24	chr1:211924200-211960600	Weak transcription	Primary T helper cells PMA-I stimulated	--
25	chr1:211931600-211964800	Weak transcription	Fetal Kidney	kidney
26	chr1:211935800-211969000	Weak transcription	Fetal Heart	heart
27	chr1:211936000-211966800	Strong transcription	Primary monocytes fromperipheralblood	blood
28	chr1:211936400-211968200	Weak transcription	HUES6 Cell Line	embryonic stem cell
29	chr1:211938200-211999400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
30	chr1:211939600-211978200	Weak transcription	Pancreatic Islets	Pancreatic Islet
31	chr1:211939600-211992600	Weak transcription	Esophagus	oesophagus
32	chr1:211939800-212002400	Weak transcription	HSMMtube	muscle
33	chr1:211940000-211965200	Weak transcription	Stomach Smooth Muscle	stomach
34	chr1:211940000-212000600	Weak transcription	Rectal Smooth Muscle	rectum
35	chr1:211940200-211964600	Weak transcription	Lung	lung
36	chr1:211940800-211964800	Weak transcription	Aorta	Aorta
37	chr1:211943200-211971200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
38	chr1:211943400-211972000	Weak transcription	HUES48 Cell Line	embryonic stem cell
39	chr1:211945800-211979000	Weak transcription	Colon Smooth Muscle	Colon
40	chr1:211946200-211984200	Weak transcription	NH-A	brain
41	chr1:211946800-211966600	Strong transcription	Primary neutrophils fromperipheralblood	blood
42	chr1:211947400-212002400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
43	chr1:211949400-211961400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
44	chr1:211950000-211987000	Weak transcription	Fetal Thymus	thymus
45	chr1:211950600-211971800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
46	chr1:211950800-211971200	Weak transcription	Placenta	Placenta
47	chr1:211951200-211959600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
48	chr1:211951200-211964400	Weak transcription	Skeletal Muscle Female	skeletal muscle
49	chr1:211951400-211959200	Weak transcription	Primary T cells fromperipheralblood	blood
50	chr1:211951400-211964200	Weak transcription	Rectal Mucosa Donor 29	rectum

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