Variant report

Variant	rs12118718
Chromosome Location	chr1:192095773-192095774
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10801097	0.86[AFR][1000 genomes]
rs10921085	0.90[AFR][1000 genomes]
rs10921086	0.88[AFR][1000 genomes]
rs10921089	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12074956	0.85[AFR][1000 genomes]
rs4445440	0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6428086	0.89[AFR][1000 genomes]
rs7543417	0.90[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1007060	chr1:191577303-192141825	Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv430047	chr1:191811587-192203678	Weak transcription Enhancers Active TSS Genic enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv548648	chr1:192001465-192096277	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:192092800-192101000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr1:192094200-192096400	Enhancers	HUES48 Cell Line	embryonic stem cell
3	chr1:192094200-192096800	Enhancers	Dnd41	blood
4	chr1:192094400-192096600	Enhancers	iPS-15b Cell Line	embryonic stem cell
5	chr1:192094800-192096000	Enhancers	HUES64 Cell Line	embryonic stem cell
6	chr1:192095000-192096200	Enhancers	HUES6 Cell Line	embryonic stem cell
7	chr1:192095200-192095800	Enhancers	HUVEC	blood vessel
8	chr1:192095200-192096000	Enhancers	Primary T cells from cord blood	blood
9	chr1:192095200-192096200	Enhancers	H1 Cell Line	embryonic stem cell
10	chr1:192095200-192096200	Enhancers	H9 Cell Line	embryonic stem cell
11	chr1:192095200-192096400	Enhancers	iPS-18 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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